Literature DB >> 31082442

The Role of Archaeal Chromatin in Transcription.

Travis J Sanders1, Craig J Marshall1, Thomas J Santangelo2.   

Abstract

Genomic organization impacts accessibility and movement of information processing systems along DNA. DNA-bound proteins dynamically dictate gene expression and provide regulatory potential to tune transcription rates to match ever-changing environmental conditions. Archaeal genomes are typically small, circular, gene dense, and organized either by histone proteins that are homologous to their eukaryotic counterparts, or small basic proteins that function analogously to bacterial nucleoid proteins. We review here how archaeal genomes are organized and how such organization impacts archaeal gene expression, focusing on conserved DNA-binding proteins within the clade and the factors that are known to impact transcription initiation and elongation within protein-bound genomes.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Alba; RNA polymerase; archaea; histone; transcription regulation

Mesh:

Substances:

Year:  2019        PMID: 31082442      PMCID: PMC6842674          DOI: 10.1016/j.jmb.2019.05.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  122 in total

Review 1.  Molecular components of the archaeal nucleosome.

Authors:  K Sandman; D Soares; J N Reeve
Journal:  Biochimie       Date:  2001-02       Impact factor: 4.079

2.  Archaeal histones and the origin of the histone fold.

Authors:  Kathleen Sandman; John N Reeve
Journal:  Curr Opin Microbiol       Date:  2006-08-22       Impact factor: 7.934

Review 3.  Recent advances in the understanding of archaeal transcription.

Authors:  Dina Grohmann; Finn Werner
Journal:  Curr Opin Microbiol       Date:  2011-05-17       Impact factor: 7.934

Review 4.  Archaeal chromatin and transcription.

Authors:  John N Reeve
Journal:  Mol Microbiol       Date:  2003-05       Impact factor: 3.501

Review 5.  Histones and chromatin structure in hyperthermophilic Archaea.

Authors:  R A Grayling; K Sandman; J N Reeve
Journal:  FEMS Microbiol Rev       Date:  1996-05       Impact factor: 16.408

6.  Electron microscopic study of DNA complexes with proteins from the Archaebacterium Sulfolobus acidocaldarius.

Authors:  R Lurz; M Grote; J Dijk; R Reinhardt; B Dobrinski
Journal:  EMBO J       Date:  1986-12-20       Impact factor: 11.598

Review 7.  Molecular Mechanisms of Transcription Initiation-Structure, Function, and Evolution of TFE/TFIIE-Like Factors and Open Complex Formation.

Authors:  Fabian Blombach; Katherine L Smollett; Dina Grohmann; Finn Werner
Journal:  J Mol Biol       Date:  2016-04-20       Impact factor: 5.469

8.  Alba shapes the archaeal genome using a delicate balance of bridging and stiffening the DNA.

Authors:  Niels Laurens; Rosalie P C Driessen; Iddo Heller; Daan Vorselen; Maarten C Noom; Felix J H Hol; Malcolm F White; Remus T Dame; Gijs J L Wuite
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

9.  The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.

Authors:  Sung-Hoon Jun; Akira Hirata; Tamotsu Kanai; Thomas J Santangelo; Tadayuki Imanaka; Katsuhiko S Murakami
Journal:  Nat Commun       Date:  2014-10-14       Impact factor: 14.919

10.  The transcript cleavage factor paralogue TFS4 is a potent RNA polymerase inhibitor.

Authors:  Thomas Fouqueau; Fabian Blombach; Ross Hartman; Alan C M Cheung; Mark J Young; Finn Werner
Journal:  Nat Commun       Date:  2017-12-04       Impact factor: 14.919

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  9 in total

Review 1.  Transcription of Bacterial Chromatin.

Authors:  Beth A Shen; Robert Landick
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

2.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

Review 3.  Emerging views of genome organization in Archaea.

Authors:  Naomichi Takemata; Stephen D Bell
Journal:  J Cell Sci       Date:  2020-05-18       Impact factor: 5.285

Review 4.  The many faces of RNA-based RNase P, an RNA-world relic.

Authors:  Hong-Duc Phan; Lien B Lai; Walter J Zahurancik; Venkat Gopalan
Journal:  Trends Biochem Sci       Date:  2021-09-09       Impact factor: 13.807

5.  Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in Thermococcus kodakarensis.

Authors:  Travis J Sanders; Fahad Ullah; Alexandra M Gehring; Brett W Burkhart; Robert L Vickerman; Sudili Fernando; Andrew F Gardner; Asa Ben-Hur; Thomas J Santangelo
Journal:  Front Microbiol       Date:  2021-05-13       Impact factor: 5.640

6.  An archaeal histone-like protein regulates gene expression in response to salt stress.

Authors:  Saaz Sakrikar; Amy K Schmid
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

7.  The hyperthermophilic archaeon Thermococcus kodakarensis is resistant to pervasive negative supercoiling activity of DNA gyrase.

Authors:  Paul Villain; Violette da Cunha; Etienne Villain; Patrick Forterre; Jacques Oberto; Ryan Catchpole; Tamara Basta
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

8.  The TK0271 Protein Activates Transcription of Aromatic Amino Acid Biosynthesis Genes in the Hyperthermophilic Archaeon Thermococcus kodakarensis.

Authors:  Yasuyuki Yamamoto; Tamotsu Kanai; Tsuyoshi Kaneseki; Haruyuki Atomi
Journal:  mBio       Date:  2019-09-10       Impact factor: 7.867

9.  FttA is a CPSF73 homologue that terminates transcription in Archaea.

Authors:  Travis J Sanders; Breanna R Wenck; Jocelyn N Selan; Mathew P Barker; Stavros A Trimmer; Julie E Walker; Thomas J Santangelo
Journal:  Nat Microbiol       Date:  2020-02-24       Impact factor: 17.745

  9 in total

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