Literature DB >> 27131143

Low-template DNA: A single DNA analysis or two replicates?

Simone Gittelson1, Carolyn R Steffen2, Michael D Coble2.   

Abstract

This study investigates the following two questions: (1) Should the DNA analyst concentrate the DNA extract into a single amplification or should he/she split it up to do two replicates? (2) Given the electropherogram obtained from a first analysis, is it worthwhile for the DNA analyst to invest in obtaining a second replicate? A decision-theoretic approach addresses these questions by quantitatively expressing the expected net gain (ENG) of each DNA analysis of interest. The results indicate that two replicates generally have a greater ENG than a single DNA analysis for DNA quantities capable of producing two replicates having an average allelic peak height as low as 43rfu. This supports the position that two replicates increase the information content with regard to a single analysis. Published by Elsevier Ireland Ltd.

Entities:  

Keywords:  Decision theory; LT-DNA; Replication; Value of information

Mesh:

Substances:

Year:  2016        PMID: 27131143      PMCID: PMC5225751          DOI: 10.1016/j.forsciint.2016.04.012

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  16 in total

1.  Validation and development of interpretation guidelines for low copy number (LCN) DNA profiling in New Zealand using the AmpFlSTR SGM Plus multiplex.

Authors:  Sue Petricevic; Jonathan Whitaker; John Buckleton; Sue Vintiner; Jayshree Patel; Pauline Simon; Helen Ferraby; Waseem Hermiz; Amanda Russell
Journal:  Forensic Sci Int Genet       Date:  2009-12-21       Impact factor: 4.882

2.  An investigation of the robustness of the consensus method of interpreting low-template DNA profiles.

Authors:  Simon Cowen; Paul Debenham; Alan Dixon; Stefan Kutranov; Jim Thomson; Kerry Way
Journal:  Forensic Sci Int Genet       Date:  2010-10-16       Impact factor: 4.882

3.  LoComatioN: a software tool for the analysis of low copy number DNA profiles.

Authors:  Peter Gill; Amanda Kirkham; James Curran
Journal:  Forensic Sci Int       Date:  2006-06-08       Impact factor: 2.395

4.  The low-template-DNA (stochastic) threshold--its determination relative to risk analysis for national DNA databases.

Authors:  Peter Gill; Roberto Puch-Solis; James Curran
Journal:  Forensic Sci Int Genet       Date:  2009-01-20       Impact factor: 4.882

5.  Validation of a DNA mixture statistics tool incorporating allelic drop-out and drop-in.

Authors:  Adele A Mitchell; Jeannie Tamariz; Kathleen O'Connell; Nubia Ducasse; Zoran Budimlija; Mechthild Prinz; Theresa Caragine
Journal:  Forensic Sci Int Genet       Date:  2012-09-20       Impact factor: 4.882

6.  U.S. population data for 29 autosomal STR loci.

Authors:  Carolyn R Hill; David L Duewer; Margaret C Kline; Michael D Coble; John M Butler
Journal:  Forensic Sci Int Genet       Date:  2013-01-11       Impact factor: 4.882

7.  Decision analysis for the genotype designation in low-template-DNA profiles.

Authors:  S Gittelson; A Biedermann; S Bozza; F Taroni
Journal:  Forensic Sci Int Genet       Date:  2013-12-04       Impact factor: 4.882

8.  Low template STR typing: effect of replicate number and consensus method on genotyping reliability and DNA database search results.

Authors:  Corina C G Benschop; Cornelis P van der Beek; Hugo C Meiland; Ankie G M van Gorp; Antoinette A Westen; Titia Sijen
Journal:  Forensic Sci Int Genet       Date:  2010-07-22       Impact factor: 4.882

9.  Comparison of STR profiling from low template DNA extracts with and without the consensus profiling method.

Authors:  Kelly S Grisedale; Angela van Daal
Journal:  Investig Genet       Date:  2012-07-02

10.  Expected net gain data of low-template DNA analyses.

Authors:  Simone Gittelson; Carolyn R Steffen; Michael D Coble
Journal:  Data Brief       Date:  2016-05-30
View more
  1 in total

1.  Expected net gain data of low-template DNA analyses.

Authors:  Simone Gittelson; Carolyn R Steffen; Michael D Coble
Journal:  Data Brief       Date:  2016-05-30
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.