Literature DB >> 27123812

Designing helical peptide inhibitors of protein-protein interactions.

Raheleh Rezaei Araghi1, Amy E Keating2.   

Abstract

Short helical peptides combine characteristics of small molecules and large proteins and provide an exciting area of opportunity in protein design. A growing number of studies report novel helical peptide inhibitors of protein-protein interactions. New techniques have been developed for peptide design and for chemically stabilizing peptides in a helical conformation, which frequently improves protease resistance and cell permeability. We summarize advances in peptide crosslinking chemistry and give examples of peptide design studies targeting coiled-coil transcription factors, Bcl-2 family proteins, MDM2/MDMX, and HIV gp41, among other targets.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID: 27123812      PMCID: PMC5282971          DOI: 10.1016/j.sbi.2016.04.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  77 in total

1.  AB-Bind: Antibody binding mutational database for computational affinity predictions.

Authors:  Sarah Sirin; James R Apgar; Eric M Bennett; Amy E Keating
Journal:  Protein Sci       Date:  2015-11-06       Impact factor: 6.725

2.  Macrocyclization of Peptide Side Chains by the Ugi Reaction: Achieving Peptide Folding and Exocyclic N-Functionalization in One Shot.

Authors:  Aldrin V Vasco; Carlos S Pérez; Fidel E Morales; Hilda E Garay; Dimitar Vasilev; José A Gavín; Ludger A Wessjohann; Daniel G Rivera
Journal:  J Org Chem       Date:  2015-06-17       Impact factor: 4.354

3.  Locating Herpesvirus Bcl-2 Homologs in the Specificity Landscape of Anti-Apoptotic Bcl-2 Proteins.

Authors:  Glenna Wink Foight; Amy E Keating
Journal:  J Mol Biol       Date:  2015-05-23       Impact factor: 5.469

Review 4.  Peptide stapling techniques based on different macrocyclisation chemistries.

Authors:  Yu Heng Lau; Peterson de Andrade; Yuteng Wu; David R Spring
Journal:  Chem Soc Rev       Date:  2014-09-08       Impact factor: 54.564

5.  Synthesis of cell-permeable stapled BH3 peptide-based Mcl-1 inhibitors containing simple aryl and vinylaryl cross-linkers.

Authors:  Avinash Muppidi; Kenichiro Doi; Carlo P Ramil; Hong-Gang Wang; Qing Lin
Journal:  Tetrahedron       Date:  2014-10-21       Impact factor: 2.457

6.  Reversible α-helix formation controlled by a hydrogen bond surrogate.

Authors:  Stephen E Miller; Neville R Kallenbach; Paramjit S Arora
Journal:  Tetrahedron       Date:  2011-12-29       Impact factor: 2.457

7.  Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA.

Authors:  J N Glover; S C Harrison
Journal:  Nature       Date:  1995-01-19       Impact factor: 49.962

8.  Structural basis of IL-23 antagonism by an Alphabody protein scaffold.

Authors:  Johan Desmet; Kenneth Verstraete; Yehudi Bloch; Eric Lorent; Yurong Wen; Bart Devreese; Karen Vandenbroucke; Stefan Loverix; Thore Hettmann; Sabrina Deroo; Klaartje Somers; Paula Henderikx; Ignace Lasters; Savvas N Savvides
Journal:  Nat Commun       Date:  2014-10-30       Impact factor: 14.919

9.  Designed BH3 peptides with high affinity and specificity for targeting Mcl-1 in cells.

Authors:  Glenna Wink Foight; Jeremy A Ryan; Stefano V Gullá; Anthony Letai; Amy E Keating
Journal:  ACS Chem Biol       Date:  2014-07-23       Impact factor: 5.100

10.  A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells.

Authors:  Erik Procko; Geoffrey Y Berguig; Betty W Shen; Yifan Song; Shani Frayo; Anthony J Convertine; Daciana Margineantu; Garrett Booth; Bruno E Correia; Yuanhua Cheng; William R Schief; David M Hockenbery; Oliver W Press; Barry L Stoddard; Patrick S Stayton; David Baker
Journal:  Cell       Date:  2014-06-19       Impact factor: 41.582

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  9 in total

Review 1.  Peptides and peptidomimetics as regulators of protein-protein interactions.

Authors:  Anna D Cunningham; Nir Qvit; Daria Mochly-Rosen
Journal:  Curr Opin Struct Biol       Date:  2017-01-04       Impact factor: 6.809

2.  Iterative optimization yields Mcl-1-targeting stapled peptides with selective cytotoxicity to Mcl-1-dependent cancer cells.

Authors:  Raheleh Rezaei Araghi; Gregory H Bird; Jeremy A Ryan; Justin M Jenson; Marina Godes; Jonathan R Pritz; Robert A Grant; Anthony Letai; Loren D Walensky; Amy E Keating
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-16       Impact factor: 11.205

Review 3.  Molecular evolution of peptides by yeast surface display technology.

Authors:  Sara Linciano; Stefano Pluda; Arianna Bacchin; Alessandro Angelini
Journal:  Medchemcomm       Date:  2019-07-10       Impact factor: 3.597

Review 4.  Engineered protein scaffolds as leads for synthetic inhibitors of protein-protein interactions.

Authors:  Michael G Wuo; Paramjit S Arora
Journal:  Curr Opin Chem Biol       Date:  2018-05-24       Impact factor: 8.822

5.  Electrophilic Helical Peptides That Bond Covalently, Irreversibly, and Selectively in a Protein-Protein Interaction Site.

Authors:  Aline Dantas de Araujo; Junxian Lim; Andrew C Good; Renato T Skerlj; David P Fairlie
Journal:  ACS Med Chem Lett       Date:  2016-11-15       Impact factor: 4.345

6.  Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1.

Authors:  Justin M Jenson; Jeremy A Ryan; Robert A Grant; Anthony Letai; Amy E Keating
Journal:  Elife       Date:  2017-06-08       Impact factor: 8.140

Review 7.  Will Peptides Help to Stop COVID-19?

Authors:  Viktoriya G Krut'; Sergei A Chuvpilo; Irina V Astrakhantseva; Liubov I Kozlovskaya; Grigory A Efimov; Andrei A Kruglov; Marina S Drutskaya; Sergei A Nedospasov
Journal:  Biochemistry (Mosc)       Date:  2022-07       Impact factor: 2.824

8.  Importance of structure-based studies for the design of a novel HIV-1 inhibitor peptide.

Authors:  María J Gomara; Yolanda Perez; Patricia Gomez-Gutierrez; Carolina Herrera; Paul Ziprin; Javier P Martinez; Andreas Meyerhans; Juan J Perez; Isabel Haro
Journal:  Sci Rep       Date:  2020-09-02       Impact factor: 4.379

9.  De novo coiled-coil peptides as scaffolds for disrupting protein-protein interactions.

Authors:  Jordan M Fletcher; Katherine A Horner; Gail J Bartlett; Guto G Rhys; Andrew J Wilson; Derek N Woolfson
Journal:  Chem Sci       Date:  2018-08-07       Impact factor: 9.825

  9 in total

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