Literature DB >> 24949974

A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells.

Erik Procko1, Geoffrey Y Berguig2, Betty W Shen3, Yifan Song1, Shani Frayo3, Anthony J Convertine2, Daciana Margineantu3, Garrett Booth3, Bruno E Correia4, Yuanhua Cheng2, William R Schief4, David M Hockenbery3, Oliver W Press3, Barry L Stoddard3, Patrick S Stayton2, David Baker1,5.   

Abstract

Because apoptosis of infected cells can limit virus production and spread, some viruses have co-opted prosurvival genes from the host. This includes the Epstein-Barr virus (EBV) gene BHRF1, a homolog of human Bcl-2 proteins that block apoptosis and are associated with cancer. Computational design and experimental optimization were used to generate a novel protein called BINDI that binds BHRF1 with picomolar affinity. BINDI recognizes the hydrophobic cleft of BHRF1 in a manner similar to other Bcl-2 protein interactions but makes many additional contacts to achieve exceptional affinity and specificity. BINDI induces apoptosis in EBV-infected cancer lines, and when delivered with an antibody-targeted intracellular delivery carrier, BINDI suppressed tumor growth and extended survival in a xenograft disease model of EBV-positive human lymphoma. High-specificity-designed proteins that selectively kill target cells may provide an advantage over the toxic compounds used in current generation antibody-drug conjugates.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24949974      PMCID: PMC4079535          DOI: 10.1016/j.cell.2014.04.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  39 in total

1.  Design and Evolution of a Miniature Bcl-2 Binding Protein We thank the HHMI Biopolymer/Keck Foundation Biotechnology Resource Laboratory (Yale University School of Medicine, New Haven, CT) for oligonucleotide and peptide synthesis and amino acid analysis and Professor Jennifer Doudna (Yale University) for use of a Perseptive Voyager-DE (MALDI-TOF) mass spectrometer. We are grateful also to Dr. Junying Yuan and Dr. Alexi Degterev (Harvard Medical School) for a generous gift of Bcl-X(L)-His(6) and Stacey E. Rutledge for helpful comments. This work was supported by the National Institutes of Health.

Authors:  Jason W. Chin; Alanna Schepartz
Journal:  Angew Chem Int Ed Engl       Date:  2001-10-15       Impact factor: 15.336

2.  Diblock copolymers with tunable pH transitions for gene delivery.

Authors:  Matthew J Manganiello; Connie Cheng; Anthony J Convertine; James D Bryers; Patrick S Stayton
Journal:  Biomaterials       Date:  2011-12-12       Impact factor: 12.479

3.  The Epstein-Barr virus Bcl-2 homolog, BHRF1, blocks apoptosis by binding to a limited amount of Bim.

Authors:  Anthony L Desbien; John W Kappler; Philippa Marrack
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-17       Impact factor: 11.205

4.  pH-responsive polymeric micelle carriers for siRNA drugs.

Authors:  A J Convertine; C Diab; M Prieve; A Paschal; A S Hoffman; P H Johnson; P S Stayton
Journal:  Biomacromolecules       Date:  2010-10-01       Impact factor: 6.988

5.  Intracellular delivery of a proapoptotic peptide via conjugation to a RAFT synthesized endosomolytic polymer.

Authors:  Craig L Duvall; Anthony J Convertine; Danielle S W Benoit; Allan S Hoffman; Patrick S Stayton
Journal:  Mol Pharm       Date:  2010-04-05       Impact factor: 4.939

6.  Structure-guided design of a selective BCL-X(L) inhibitor.

Authors:  Guillaume Lessene; Peter E Czabotar; Brad E Sleebs; Kerry Zobel; Kym N Lowes; Jerry M Adams; Jonathan B Baell; Peter M Colman; Kurt Deshayes; Wayne J Fairbrother; John A Flygare; Paul Gibbons; Wilhelmus J A Kersten; Sanji Kulasegaram; Rebecca M Moss; John P Parisot; Brian J Smith; Ian P Street; Hong Yang; David C S Huang; Keith G Watson
Journal:  Nat Chem Biol       Date:  2013-04-21       Impact factor: 15.040

7.  Cycloheximide-induced apoptosis in Burkitt lymphoma (BJA-B) cells with and without Epstein-Barr virus infection.

Authors:  H H Ishii; M R Etheridge; G C Gobé
Journal:  Immunol Cell Biol       Date:  1995-10       Impact factor: 5.126

8.  Epstein-Barr virus-encoded Bcl-2 homologue functions as a survival factor in Wp-restricted Burkitt lymphoma cell line P3HR-1.

Authors:  Ami Watanabe; Seiji Maruo; Taku Ito; Miho Ito; Koichi Ricardo Katsumura; Kenzo Takada
Journal:  J Virol       Date:  2009-12-30       Impact factor: 5.103

9.  Principles for designing ideal protein structures.

Authors:  Nobuyasu Koga; Rie Tatsumi-Koga; Gaohua Liu; Rong Xiao; Thomas B Acton; Gaetano T Montelione; David Baker
Journal:  Nature       Date:  2012-11-08       Impact factor: 49.962

10.  Proof of principle for epitope-focused vaccine design.

Authors:  Bruno E Correia; John T Bates; Rebecca J Loomis; Gretchen Baneyx; Chris Carrico; Joseph G Jardine; Peter Rupert; Colin Correnti; Oleksandr Kalyuzhniy; Vinayak Vittal; Mary J Connell; Eric Stevens; Alexandria Schroeter; Man Chen; Skye Macpherson; Andreia M Serra; Yumiko Adachi; Margaret A Holmes; Yuxing Li; Rachel E Klevit; Barney S Graham; Richard T Wyatt; David Baker; Roland K Strong; James E Crowe; Philip R Johnson; William R Schief
Journal:  Nature       Date:  2014-02-05       Impact factor: 49.962

View more
  55 in total

1.  Computational design and experimental verification of a symmetric protein homodimer.

Authors:  Yun Mou; Po-Ssu Huang; Fang-Ciao Hsu; Shing-Jong Huang; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-12       Impact factor: 11.205

Review 2.  Smart nanosystems: Bio-inspired technologies that interact with the host environment.

Authors:  Ester J Kwon; Justin H Lo; Sangeeta N Bhatia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

3.  Optimization of Protein Thermostability and Exploitation of Recognition Behavior to Engineer Altered Protein-DNA Recognition.

Authors:  Abigail R Lambert; Jazmine P Hallinan; Rachel Werther; Dawid Głów; Barry L Stoddard
Journal:  Structure       Date:  2020-04-30       Impact factor: 5.006

4.  High-throughput characterization of protein-protein interactions by reprogramming yeast mating.

Authors:  David Younger; Stephanie Berger; David Baker; Eric Klavins
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-31       Impact factor: 11.205

5.  Massively parallel de novo protein design for targeted therapeutics.

Authors:  Aaron Chevalier; Daniel-Adriano Silva; Gabriel J Rocklin; Derrick R Hicks; Renan Vergara; Patience Murapa; Steffen M Bernard; Lu Zhang; Kwok-Ho Lam; Guorui Yao; Christopher D Bahl; Shin-Ichiro Miyashita; Inna Goreshnik; James T Fuller; Merika T Koday; Cody M Jenkins; Tom Colvin; Lauren Carter; Alan Bohn; Cassie M Bryan; D Alejandro Fernández-Velasco; Lance Stewart; Min Dong; Xuhui Huang; Rongsheng Jin; Ian A Wilson; Deborah H Fuller; David Baker
Journal:  Nature       Date:  2017-09-27       Impact factor: 49.962

6.  Locating Herpesvirus Bcl-2 Homologs in the Specificity Landscape of Anti-Apoptotic Bcl-2 Proteins.

Authors:  Glenna Wink Foight; Amy E Keating
Journal:  J Mol Biol       Date:  2015-05-23       Impact factor: 5.469

7.  Peptide design by optimization on a data-parameterized protein interaction landscape.

Authors:  Justin M Jenson; Vincent Xue; Lindsey Stretz; Tirtha Mandal; Lothar Luther Reich; Amy E Keating
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-15       Impact factor: 11.205

8.  Rational design of TNFα binding proteins based on the de novo designed protein DS119.

Authors:  Cheng Zhu; Changsheng Zhang; Tao Zhang; Xiaoling Zhang; Qi Shen; Bo Tang; Huanhuan Liang; Luhua Lai
Journal:  Protein Sci       Date:  2016-09-13       Impact factor: 6.725

9.  Enzyme-Cleavable Polymeric Micelles for the Intracellular Delivery of Proapoptotic Peptides.

Authors:  Hanna B Kern; Selvi Srinivasan; Anthony J Convertine; David Hockenbery; Oliver W Press; Patrick S Stayton
Journal:  Mol Pharm       Date:  2017-03-30       Impact factor: 4.939

10.  PixelDB: Protein-peptide complexes annotated with structural conservation of the peptide binding mode.

Authors:  Vincent Frappier; Madeleine Duran; Amy E Keating
Journal:  Protein Sci       Date:  2017-11-02       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.