Literature DB >> 27122396

Next-Generation Sequencing of the Bacterial 16S rRNA Gene for Forensic Soil Comparison: A Feasibility Study.

Ellen M Jesmok1, James M Hopkins1, David R Foran2.   

Abstract

Soil has the potential to be valuable forensic evidence linking a person or item to a crime scene; however, there is no established soil individualization technique. In this study, the utility of soil bacterial profiling via next-generation sequencing of the 16S rRNA gene was examined for associating soils with their place of origin. Soil samples were collected from ten diverse and nine similar habitats over time, and within three habitats at various horizontal and vertical distances. Bacterial profiles were analyzed using four methods: abundance charts and nonmetric multidimensional scaling provided simplification and visualization of the massive datasets, potentially aiding in expert testimony, while analysis of similarities and k-nearest neighbor offered objective statistical comparisons. The vast majority of soil bacterial profiles (95.4%) were classified to their location of origin, highlighting the potential of bacterial profiling via next-generation sequencing for the forensic analysis of soil samples.
© 2016 American Academy of Forensic Sciences.

Entities:  

Keywords:  analysis of similarities; bacterial abundance charts; bacterial profiling; forensic science; k-nearest neighbor; nonmetric multidimensional scaling; soil evidence; soil profiling

Mesh:

Substances:

Year:  2016        PMID: 27122396     DOI: 10.1111/1556-4029.13049

Source DB:  PubMed          Journal:  J Forensic Sci        ISSN: 0022-1198            Impact factor:   1.832


  11 in total

Review 1.  Microbiomes in forensic botany: a review.

Authors:  Sarah Ishak; Eleanor Dormontt; Jennifer M Young
Journal:  Forensic Sci Med Pathol       Date:  2021-04-08       Impact factor: 2.007

Review 2.  Increasing the reach of forensic genetics with massively parallel sequencing.

Authors:  Bruce Budowle; Sarah E Schmedes; Frank R Wendt
Journal:  Forensic Sci Med Pathol       Date:  2017-06-19       Impact factor: 2.007

3.  A protocol for obtaining DNA barcodes from plant and insect fragments isolated from forensic-type soils.

Authors:  Kelly A Meiklejohn; Megan L Jackson; Libby A Stern; James M Robertson
Journal:  Int J Legal Med       Date:  2018-02-08       Impact factor: 2.686

Review 4.  The Future of Environmental DNA in Forensic Science.

Authors:  Julia S Allwood; Noah Fierer; Robert R Dunn
Journal:  Appl Environ Microbiol       Date:  2020-01-07       Impact factor: 4.792

5.  Bioinformatics Approach to Assess the Biogeographical Patterns of Soil Communities: The Utility for Soil Provenance.

Authors:  Natalie Damaso; Julian Mendel; Maria Mendoza; Eric J von Wettberg; Giri Narasimhan; DeEtta Mills
Journal:  J Forensic Sci       Date:  2018-01-22       Impact factor: 1.832

6.  The spatial variation of soil bacterial community assembly processes affects the accuracy of source tracking in ten major Chinese cities.

Authors:  Teng Yang; Yu Shi; Jun Zhu; Chang Zhao; Jianmei Wang; Zhiyong Liu; Xiao Fu; Xu Liu; Jiangwei Yan; Meiqing Yuan; Haiyan Chu
Journal:  Sci China Life Sci       Date:  2021-01-08       Impact factor: 6.038

7.  LRLSHMDA: Laplacian Regularized Least Squares for Human Microbe-Disease Association prediction.

Authors:  Fan Wang; Zhi-An Huang; Xing Chen; Zexuan Zhu; Zhenkun Wen; Jiyun Zhao; Gui-Ying Yan
Journal:  Sci Rep       Date:  2017-08-08       Impact factor: 4.379

8.  Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?

Authors:  Laura M Boggs; Melissa K R Scheible; Gustavo Machado; Kelly A Meiklejohn
Journal:  Genes (Basel)       Date:  2019-06-06       Impact factor: 4.096

Review 9.  Forensic Applications of Microbiomics: A Review.

Authors:  Jake M Robinson; Zohar Pasternak; Christopher E Mason; Eran Elhaik
Journal:  Front Microbiol       Date:  2021-01-13       Impact factor: 5.640

10.  Forensic Microbiological Analysis of Soil and the Physical Evidence Buried in Soil Obtained from Several Towns in Istanbul.

Authors:  Fatma Gül Efeoğlu; Hüseyin Çakan; Umut Kara; Taner Daş
Journal:  Cureus       Date:  2022-02-17
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