Literature DB >> 33519756

Forensic Applications of Microbiomics: A Review.

Jake M Robinson1,2, Zohar Pasternak3, Christopher E Mason4,5,6, Eran Elhaik7.   

Abstract

The rise of microbiomics and metagenomics has been driven by advances in genomic sequencing technology, improved microbial sampling methods, and fast-evolving approaches in bioinformatics. Humans are a host to diverse microbial communities in and on their bodies, which continuously interact with and alter the surrounding environments. Since information relating to these interactions can be extracted by analyzing human and environmental microbial profiles, they have the potential to be relevant to forensics. In this review, we analyzed over 100 papers describing forensic microbiome applications with emphasis on geolocation, personal identification, trace evidence, manner and cause of death, and inference of the postmortem interval (PMI). We found that although the field is in its infancy, utilizing microbiome and metagenome signatures has the potential to enhance the forensic toolkit. However, many of the studies suffer from limited sample sizes and model accuracies, and unrealistic environmental settings, leaving the full potential of microbiomics to forensics unexplored. It is unlikely that the information that can currently be elucidated from microbiomics can be used by law enforcement. Nonetheless, the research to overcome these challenges is ongoing, and it is foreseeable that microbiome-based evidence could contribute to forensic investigations in the future.
Copyright © 2021 Robinson, Pasternak, Mason and Elhaik.

Entities:  

Keywords:  forensic microbiology; forensic science; metagenomics; microbial forensics; microbiome; microbiomics; postmortem interval

Year:  2021        PMID: 33519756      PMCID: PMC7838326          DOI: 10.3389/fmicb.2020.608101

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   5.640


  107 in total

1.  Detection of bacterioplankton using PCR probes as a diagnostic indicator for drowning; the Leicester experience.

Authors:  Guy N Rutty; Carina J Bradley; Mike J P Biggs; Frances E Hollingbury; Stuart J Hamilton; Roger D G Malcomson; Christopher W Holmes
Journal:  Leg Med (Tokyo)       Date:  2015-06-23       Impact factor: 1.376

2.  Microbiome-based body fluid identification of samples exposed to indoor conditions.

Authors:  Akos Dobay; Cordula Haas; Geoffrey Fucile; Nora Downey; Hilary G Morrison; Adelgunde Kratzer; Natasha Arora
Journal:  Forensic Sci Int Genet       Date:  2019-02-11       Impact factor: 4.882

Review 3.  An interdisciplinary review of the thanatomicrobiome in human decomposition.

Authors:  Gulnaz T Javan; Sheree J Finley; Sari Tuomisto; Ashley Hall; M Eric Benbow; DeEtta Mills
Journal:  Forensic Sci Med Pathol       Date:  2018-12-05       Impact factor: 2.007

4.  Bacterial community in the rumen of Tibetan sheep and Gansu alpine fine-wool sheep grazing on the Qinghai-Tibetan Plateau, China.

Authors:  Jinqiang Huang; Yongjuan Li; Yuzhu Luo
Journal:  J Gen Appl Microbiol       Date:  2017-02-24       Impact factor: 1.452

5.  Undetermined Manner of Death: An Autopsy Series.

Authors:  Anne-Sophie Advenier; Nadege Guillard; Jean-Claude Alvarez; Laurent Martrille; Geoffroy Lorin de la Grandmaison
Journal:  J Forensic Sci       Date:  2015-08-03       Impact factor: 1.832

6.  The role of Interleukin-6, its -174 G>C polymorphism and C-reactive protein in idiopathic cardiac arrhythmias in children.

Authors:  L Szydlowski; A Skierska; G Markiewicz-Loskot; B Mazurek; A Morka; A Undas
Journal:  Adv Med Sci       Date:  2013       Impact factor: 3.287

7.  Single-molecule sequencing detection of N6-methyladenine in microbial reference materials.

Authors:  Alexa B R McIntyre; Noah Alexander; Kirill Grigorev; Daniela Bezdan; Heike Sichtig; Charles Y Chiu; Christopher E Mason
Journal:  Nat Commun       Date:  2019-02-04       Impact factor: 14.919

8.  Longitudinal analysis of microbial interaction between humans and the indoor environment.

Authors:  Simon Lax; Daniel P Smith; Jarrad Hampton-Marcell; Sarah M Owens; Kim M Handley; Nicole M Scott; Sean M Gibbons; Peter Larsen; Benjamin D Shogan; Sophie Weiss; Jessica L Metcalf; Luke K Ursell; Yoshiki Vázquez-Baeza; Will Van Treuren; Nur A Hasan; Molly K Gibson; Rita Colwell; Gautam Dantas; Rob Knight; Jack A Gilbert
Journal:  Science       Date:  2014-08-29       Impact factor: 47.728

9.  The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report.

Authors: 
Journal:  Microbiome       Date:  2016-06-03       Impact factor: 14.650

10.  Cecal microbiota of Tibetan Chickens from five geographic regions were determined by 16S rRNA sequencing.

Authors:  Xueyan Zhou; Xiaosong Jiang; Chaowu Yang; Bingcun Ma; Changwei Lei; Changwen Xu; Anyun Zhang; Xin Yang; Qi Xiong; Peng Zhang; Shuai Men; Rong Xiang; Hongning Wang
Journal:  Microbiologyopen       Date:  2016-05-02       Impact factor: 3.139

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  5 in total

1.  Impact of Bacillus licheniformis SV1 Derived Glycolipid on Candida glabrata Biofilm.

Authors:  Sonam Gupta; Payal Gupta; Vikas Pruthi
Journal:  Curr Microbiol       Date:  2021-03-27       Impact factor: 2.188

Review 2.  Forensic Analysis of Human Microbiome in Skin and Body Fluids Based on Geographic Location.

Authors:  Hye-Won Cho; Yong-Bin Eom
Journal:  Front Cell Infect Microbiol       Date:  2021-08-12       Impact factor: 5.293

Review 3.  On the Identification of Body Fluids and Tissues: A Crucial Link in the Investigation and Solution of Crime.

Authors:  Titia Sijen; SallyAnn Harbison
Journal:  Genes (Basel)       Date:  2021-10-28       Impact factor: 4.096

Review 4.  Usefulness of Microbiome for Forensic Geolocation: A Review.

Authors:  Christian Haarkötter; María Saiz; Xiomara Gálvez; María Isabel Medina-Lozano; Juan Carlos Álvarez; José Antonio Lorente
Journal:  Life (Basel)       Date:  2021-11-30

5.  Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation.

Authors:  Daniel Podlesny; Cesar Arze; Elisabeth Dörner; Sandeep Verma; Sudhir Dutta; Jens Walter; W Florian Fricke
Journal:  Microbiome       Date:  2022-03-25       Impact factor: 14.650

  5 in total

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