Silas Busck Mellor1,2, Agnieszka Zygadlo Nielsen1,2, Meike Burow1,3, Mohammed Saddik Motawia1,2, Dainius Jakubauskas1,2, Birger Lindberg Møller1,2,4, Poul Erik Jensen1,2,4. 1. Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, University of Copenhagen , Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark. 2. Center for Synthetic Biology "bioSYNergy" , Thorvaldsensvej 40, 1871 Frederiksberg, Denmark. 3. DynaMo Center of Excellence, Department of Plant and Environmental Sciences, University of Copenhagen , Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark. 4. Villum Research Center of Excellence "Plant Plasticity", University of Copenhagen , Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark.
Abstract
Cytochrome P450s (P450s) are key enzymes in the synthesis of bioactive natural products in plants. Efforts to harness these enzymes for in vitro and whole-cell production of natural products have been hampered by difficulties in expressing them heterologously in their active form, and their requirement for NADPH as a source of reducing power. We recently demonstrated targeting and insertion of plant P450s into the photosynthetic membrane and photosynthesis-driven, NADPH-independent P450 catalytic activity mediated by the electron carrier protein ferredoxin. Here, we report the fusion of ferredoxin with P450 CYP79A1 from the model plant Sorghum bicolor, which catalyzes the initial step in the pathway leading to biosynthesis of the cyanogenic glucoside dhurrin. Fusion with ferredoxin allows CYP79A1 to obtain electrons for catalysis by interacting directly with photosystem I. Furthermore, electrons captured by the fused ferredoxin moiety are directed more effectively toward P450 catalytic activity, making the fusion better able to compete with endogenous electron sinks coupled to metabolic pathways. The P450-ferredoxin fusion enzyme obtains reducing power solely from its fused ferredoxin and outperforms unfused CYP79A1 in vivo. This demonstrates greatly enhanced electron transfer from photosystem I to CYP79A1 as a consequence of the fusion. The fusion strategy reported here therefore forms the basis for enhanced partitioning of photosynthetic reducing power toward P450-dependent biosynthesis of important natural products.
Cytochrome P450s (P450s) are key enzymes in the synthesis of bioactive natural products in plants. Efforts to harness these enzymes for in vitro and whole-cell production of natural products have been hampered by difficulties in expressing them heterologously in their active form, and their requirement for NADPH as a source of reducing power. We recently demonstrated targeting and insertion of plant P450s into the photosynthetic membrane and photosynthesis-driven, NADPH-independent P450 catalytic activity mediated by the electron carrier protein ferredoxin. Here, we report the fusion of ferredoxin with P450 CYP79A1 from the model plant Sorghum bicolor, which catalyzes the initial step in the pathway leading to biosynthesis of the cyanogenic glucosidedhurrin. Fusion with ferredoxin allows CYP79A1 to obtain electrons for catalysis by interacting directly with photosystem I. Furthermore, electrons captured by the fused ferredoxin moiety are directed more effectively toward P450 catalytic activity, making the fusion better able to compete with endogenous electron sinks coupled to metabolic pathways. The P450-ferredoxin fusion enzyme obtains reducing power solely from its fused ferredoxin and outperforms unfused CYP79A1 in vivo. This demonstrates greatly enhanced electron transfer from photosystem I to CYP79A1 as a consequence of the fusion. The fusion strategy reported here therefore forms the basis for enhanced partitioning of photosynthetic reducing power toward P450-dependent biosynthesis of important natural products.
With the
continued development
of tools for engineering biosynthetic pathways into microorganisms,
elucidation of routes leading to plant natural products of high value
is attracting considerable interest.[1−3] Cytochrome P450s (P450s)
are key enzymes in specialized metabolism and are involved in the
formation of terpenoids, alkaloids, cyanogenic glycosides, glucosinolates,
and phenylpropanoids like flavonoids, coumarins, and stilbenes. They
catalyze stereo- and regiospecific hydroxylations, epoxidations, and
C–C couplings that are often difficult to accomplish by chemical
synthesis. In eukaryotes, P450s reside on the endoplasmic reticulum,
and plant genomes often contain several hundred P450-encoding genes.[4−6] Biotechnological production of many high-value specialized metabolites
thus requires heterologous expression of one or more P450s in highly
active form. The yeastSaccharomyces cerevisiae remains
the favored host for introduction of plant P450-dependent pathways,[1] but cyanobacteria are gaining in popularity and
offer unparalleled sustainability because they too are photosynthetic
organisms and therefore require minimal nutrient input.[7] We recently showed that the thylakoid membranes
of both cyanobacteria and plants, which host the photosynthetic apparatus,
can also accommodate plant P450s.[8−11]Two key issues encountered
when engineering P450-dependent pathways
are the need for high-level functional expression of the P450 and
the provision of sufficient reducing power to drive their catalytic
cycle.[12] This study addresses the latter.
Many alternative P450 reductase systems and P450-reductase fusions
have been reported, but only a few have resulted in increased activity.[13] Photosynthetic hosts offer several advantages
for P450-dependent pathways:[2,3] Plant P450s are functionally
active when targeted to thylakoid membranes and benefit from the ample
supply of electrons and molecular oxygen generated by photosynthetic
electron transport (Figure a).[8,9] Cyanobacteria or plant-cell cultures may
thus constitute a useful vehicle for environmentally contained, heterologous
production of specialized plant metabolites of high value, such as
structurally complex diterpenoids functionalized in P450-dependent
reactions.[14−18] However, competition from native electron sinks, such as the metabolic
reactions involved in CO2 fixation and redox regulation
processes,[8] complicates the diversion of
electrons from photosynthesis to non-native processes. In an effort
to improve partitioning of electrons toward the P450, we have now
designed and tested fusions that covalently connect the electron transfer
protein ferredoxin (Fd) to the well-characterized P450 CYP79A1 from Sorghum bicolor (Figure a).
Figure 1
Overview of light-driven biosynthesis and fusion constructs
used
in this study. (a) Schematic illustration of the interfacing of photosynthetic
electron transport with light-driven biosynthesis by fusing ferredoxin
to CYP79A1 in the thylakoid membrane, thus directing electrons toward
cytochrome P450-catalyzed hydroxylations. OEC, oxygen-evolving complex;
PSII, photosystem II; PQ, plastoquinone pool; Cyt b6f,
cytochrome b6f; PC, plastocyanin; PSI,
photosystem I; Fd, ferredoxin; FNR, ferredoxin:NADPH-reductase. (b)
Design of gene constructs that fuse CYP79A1 from Sorghum bicolor to the major Fd of Arabidopsis thaliana, Fd2.[35] All constructs included an N-terminal Fd chloroplast
transit peptide (CTP), which targets them to the chloroplast. The
mature Fd (F) was fused via a 15-residue linker either
to the full-length CYP79A1 (C) or to its heme domain lacking the transmembrane
(TM) anchor (CΔ). ID, abbreviated construct names;
Mr, calculated mass (not counting the transit peptide).
Overview of light-driven biosynthesis and fusion constructs
used
in this study. (a) Schematic illustration of the interfacing of photosynthetic
electron transport with light-driven biosynthesis by fusing ferredoxin
to CYP79A1 in the thylakoid membrane, thus directing electrons toward
cytochrome P450-catalyzed hydroxylations. OEC, oxygen-evolving complex;
PSII, photosystem II; PQ, plastoquinone pool; Cyt b6f,
cytochrome b6f; PC, plastocyanin; PSI,
photosystem I; Fd, ferredoxin; FNR, ferredoxin:NADPH-reductase. (b)
Design of gene constructs that fuse CYP79A1 from Sorghum bicolor to the major Fd of Arabidopsis thaliana, Fd2.[35] All constructs included an N-terminal Fd chloroplast
transit peptide (CTP), which targets them to the chloroplast. The
mature Fd (F) was fused via a 15-residue linker either
to the full-length CYP79A1 (C) or to its heme domain lacking the transmembrane
(TM) anchor (CΔ). ID, abbreviated construct names;
Mr, calculated mass (not counting the transit peptide).In the current study, we expressed
and targeted P450-Fd fusions
to the chloroplast in Nicotiana benthamiana. One
of the fusion constructs, which could acquire photosynthetic reducing
power by direct electron transfer from photosystem I without the need
for a dedicated reductase, was better able to compete with endogenous
electron sinks and showed higher in vivo activity
than the native enzyme. This study thus represents a proof of concept
that P450-Fd fusions can interface directly with electron transfer
from photosystem I and divert more photosynthetic reducing power to
engineered metabolism.
Results
Design of CYP79A1-Ferredoxin
Fusion Proteins
The initial
step in the biosynthetic pathway leading to the cyanogenic glucosidedhurrin in Sorghum bicolor(19−21) is the conversion
of l-tyrosine to (E)-p-hydroxyphenylacetaldoxime,
which is catalyzed by CYP79A1.[21−24] We chose CYP79A1 for our ferredoxin (Fd) fusion studies
because it is stable both in its native ER and in photosynthetic membranes[8,9] and well characterized.[21,22,24] We designed three different fusion constructs—two C-terminal
fusions named CΔF and CF and one N-terminal construct
FCΔ (Figure b). A linker length of 15 amino acids was chosen based on
the distances between the C-terminus of CYP79A1 and the N-terminus
of Fd derived from docking models, the presence in CYP79A1 of four
C-terminal residues with predicted random-coil secondary structure
not resolved in crystal structures,[25] and
the estimated distance from the edge of photosystem I to its Fd binding
site (Supporting Figure S1). A Gly/Ser-rich
sequence was chosen to avoid secondary structure and maximize the
ability of the Fd domain to transfer electrons to the heme of CYP79A1
and reduce susceptibility to proteases.[26] Because the native CYP79A1 (named C in Figure b) contains an N-terminal transmembrane domain
that normally anchors it to the ER membrane, N-terminal fusions to
Fd were constructed with CYP79A1 lacking this domain, to avoid placing
Fd and CYP79A1 domains on opposite sides of the thylakoid membrane.
An additional C-terminal Fd fusion with the same truncated CYP79A1
variant was therefore assembled to control for differences due to
a lack of the transmembrane anchor.
Chloroplast Sublocalization
of Fusion Proteins
We used Agrobacterium-mediated infiltration of N. benthamiana leaves
to generate plants that transiently expressed the CYP79A1
constructs. Subsequently, we fractionated intact chloroplasts prepared
from infiltrated leaves and subjected each fraction to immunoblot
analysis with an anti-CYP79 antibody to verify that the Fd transit
peptide targeted fusion proteins to thylakoid membranes (Figure a). As expected,
the fusions were found mainly in thylakoid fractions, though both
FCΔ and CΔF were also detectable
in the stromal fraction.
Figure 2
CYP79A1-ferredoxin fusion enzymes localized
to thylakoid membranes
of tobacco chloroplasts and containing both CYP79A1 and ferredoxin
epitopes. (a) Immunoblot analysis of chloroplasts isolated from tobacco
leaves 5 days after agroinfiltration and fractionated into stroma
(S) and thylakoid (T) fractions. Membranes were probed with antibodies
against either CYP79A1, the D1 protein of photosystem II (PsbA, a
thylakoid marker), or a RuBisCo small subunit (RbcS, a stroma marker).
Mobilities of protein standards of known mass (in kDa) are indicated
on the left. The immunoblot probed with the CYP79A1 antibody is shown
as the original exposure and in a digitally enhanced version that
emphasizes weak signals. (b) Immunoblot analysis of thylakoids isolated
from tobacco expressing fusion constructs as in a, probed with antibodies
against CYP79A1 or ferredoxin (Fd).
CYP79A1-ferredoxin fusion enzymes localized
to thylakoid membranes
of tobacco chloroplasts and containing both CYP79A1 and ferredoxin
epitopes. (a) Immunoblot analysis of chloroplasts isolated from tobacco
leaves 5 days after agroinfiltration and fractionated into stroma
(S) and thylakoid (T) fractions. Membranes were probed with antibodies
against either CYP79A1, the D1 protein of photosystem II (PsbA, a
thylakoid marker), or a RuBisCo small subunit (RbcS, a stroma marker).
Mobilities of protein standards of known mass (in kDa) are indicated
on the left. The immunoblot probed with the CYP79A1 antibody is shown
as the original exposure and in a digitally enhanced version that
emphasizes weak signals. (b) Immunoblot analysis of thylakoids isolated
from tobacco expressing fusion constructs as in a, probed with antibodies
against CYP79A1 or ferredoxin (Fd).Immunoblot analyses performed with an antibody raised against
ferredoxin
showed clear signals for CΔF, CF, and FCΔ constructs, but not the unfused construct C (Figure b), thus confirming that the translated fusion
proteins contained both CYP79A1 and Fd domains. The CΔF, CF, and FCΔ proteins comprised 0.2–2.6%
of total thylakoid protein, based on SDS-PAGE densitometry (Supporting Figure S2c). The C protein could not
be quantified by this approach because it comigrated with the abundant
β-subunit of ATP synthase. A high pigment background (due to
chlorophylls and carotenoids) in the isolated thylakoid membranes
interfered with standard determination of concentrations of the P450s
by CO difference spectra, and we therefore measured their relative
levels by immunoblot analysis (Supporting Figure S2a,b and Supporting Table S1).
Fusion with Fd Directs
Electrons to CYP79A1 in the Absence of
Soluble Fd
We next performed enzyme assays using thylakoid
preparations containing C, CΔF, CF, or FCΔ protein to investigate whether the Fd domain fused to CΔF, CF, and FCΔ mediated direct electron transfer
from photosystem I to the heme of the CYP79A1 domain. In vitro assays were carried out to assess whether added soluble Fd was required
for electron transfer between photosystem I and the P450s (Figure ). Only the CF fusion
protein harboring the full-length CYP79A1 protein was found to exhibit
substantial activity in the absence of added soluble Fd. Direct electron
transfer between Fd and CYP79A1 domains also operated in assays in
which the Fd domain was reduced in a light-independent manner by the
enzyme ferredoxin:NADP+ reductase (FNR) in the presence
of NADPH (Supporting Figure S3). Based
on these findings, we focused subsequent experiments on characterizing
the function of the CF enzyme.
Figure 3
Comparison of in vitro light-driven enzyme activity
from N. benthamiana thylakoids harboring CYP79A1
enzyme variants. Assays were carried out in the presence or absence
of 8.3 μM soluble Fd (+Fd or – Fd) as an electron carrier.
Bars show average activities of four separate thylakoid preparations
per construct, normalized to their relative protein levels as determined
from immunoblotting experiments. Error bars indicate ± SD of
biological replicates.
Comparison of in vitro light-driven enzyme activity
from N. benthamiana thylakoids harboring CYP79A1
enzyme variants. Assays were carried out in the presence or absence
of 8.3 μM soluble Fd (+Fd or – Fd) as an electron carrier.
Bars show average activities of four separate thylakoid preparations
per construct, normalized to their relative protein levels as determined
from immunoblotting experiments. Error bars indicate ± SD of
biological replicates.
Dependence of Activity on Soluble Ferredoxin
Because
the activity of CF was unchanged by the addition of soluble Fd in
our initial experiments, we performed light-driven activity assays
with varying concentrations of soluble Fd to compare the fusion protein’s
dependence on soluble Fd with that of the unfused C enzyme. Increasing
the Fd concentration from 1 to 16.6 μM caused only a modest
1.2-fold increase in the activity of the CF enzyme, compared to a
4-fold increase and clear saturation in the activity of C (Figure a). To test whether
the reduced activity of CF was due to suboptimal interaction with
photosystem I, we performed activity assays with varying Fd concentrations
under dark conditions, using a soluble electron donor system composed
of NADPH and FNR (Figure b). As in the light-driven assays (Figure a), the >15-fold increase in Fd concentration
only modestly enhanced CF activity (by 1.6-fold), while the activity
of C increased 10-fold and did not saturate (Figure b). Overall activity was 3–4 times
lower for both C and CF in this assay compared to the light-driven
assay. To investigate the importance of thylakoid integrity for the
activity of C and CF enzymes, we compared light-driven activities
of C and CF in intact and solubilized thylakoid membranes. Solubilization
of the membrane reduced the activity of the CF enzyme by 80% but did
not affect that of C (Figure c).
Figure 4
Effects of soluble ferredoxin and detergent on in vitro enzyme activity of C and CF proteins. (a) Light-dependent enzyme
activity of thylakoids harboring either C or CF, driven by electron
transfer from soluble or fused ferredoxin reduced by photosystem I.
(b) Enzyme activity of dark-incubated thylakoids harboring C or CF,
driven by electron transfer from soluble or fused ferredoxin reduced
by 0.6 μM FNR in the presence of 0.5 mM NADPH. (c) Light-dependent
activity of intact (-βDM) or solubilized (+βDM) thylakoids
harboring C or CF in the presence of 8.3 μM soluble Fd. Experimental
values are means of four technical repeats each, normalized to relative
protein levels determined by immunoblot, with error bars showing ±
SD. βDM, n-dodecyl β-D-maltoside.
Effects of soluble ferredoxin and detergent on in vitro enzyme activity of C and CF proteins. (a) Light-dependent enzyme
activity of thylakoids harboring either C or CF, driven by electron
transfer from soluble or fused ferredoxin reduced by photosystem I.
(b) Enzyme activity of dark-incubated thylakoids harboring C or CF,
driven by electron transfer from soluble or fused ferredoxin reduced
by 0.6 μM FNR in the presence of 0.5 mM NADPH. (c) Light-dependent
activity of intact (-βDM) or solubilized (+βDM) thylakoids
harboring C or CF in the presence of 8.3 μM soluble Fd. Experimental
values are means of four technical repeats each, normalized to relative
protein levels determined by immunoblot, with error bars showing ±
SD. βDM, n-dodecyl β-D-maltoside.
Dependence of Activity
on Ionic Strength
Because Fd
interacts electrostatically with redox partners,[27] we examined the effect of the ionic strength (I) on the interaction between Fd and the enzymes C and CF. The activity
of C showed a marked bell-shaped dependence on I,
reaching a maximum at I = 60 mM, whereas CF was largely
unaffected by I (Figure a). To test whether fusion with Fd enabled
CF to acquire more electrons from photosystem I even in the presence
of a competing sink, we examined the effect of I on
the light-driven activity in the presence of FNR and the acceptor
NADP+. FNR and NADP+ competed strongly with
C and CF for reduced ferredoxin, as the catalytic activities of both
enzymes were reduced in their presence. However, CF retained more
activity (up to 57% (78%) of its peak activity in the presence (absence)
of soluble ferredoxin, respectively) than C (18% of maximal or less)
under these conditions (Figure b).
Figure 5
Effect of ionic strength on light-driven enzyme activity of tobacco
thylakoids containing C (+soluble Fd) or CF (±soluble Fd). (a)
Dependence of C and CF activity on ionic strength, adjusted with NaCl.
(b) Dependence on ionic strength of C and CF activity measured in
the presence of 0.6 μM FNR and 1.63 mM NADP+ acting
as a competing electron sink for reduced Fd. Data are plotted relative
to the maximum activity of C obtained in a. Curves show mean activities
from (a) four or (b) two technical replicates, normalized to the relative
levels of C and CF proteins. Error bars indicate ± SD.
Effect of ionic strength on light-driven enzyme activity of tobacco
thylakoids containing C (+soluble Fd) or CF (±soluble Fd). (a)
Dependence of C and CF activity on ionic strength, adjusted with NaCl.
(b) Dependence on ionic strength of C and CF activity measured in
the presence of 0.6 μM FNR and 1.63 mM NADP+ acting
as a competing electron sink for reduced Fd. Data are plotted relative
to the maximum activity of C obtained in a. Curves show mean activities
from (a) four or (b) two technical replicates, normalized to the relative
levels of C and CF proteins. Error bars indicate ± SD.
In Vivo Activity of C and CF
Because in vitro activities
of C and CF depended greatly on assay
conditions, we examined the in vivo activity of both
chloroplast-targeted proteins by quantifying reaction products extracted
directly from tobacco. The aldoxime produced by ER-localized CYP79A1
was previously shown to undergo glycosylation in tobacco plants.[28] To test whether chloroplast-produced p-hydrophenylacetaldoxime was glycosylated in our transient
transfection experiments, we treated extracts of infiltrated leaves
with a commercial β-glucosidase mixture and observed the release
of large amounts of p-hydroxyphenylacetaldoxime (Supporting Figure S4).We also synthesized
the glucosidep-glycosyloxyphenylacetaldoxime (see Supporting Information, Materials and Methods), which allowed us to quantify both free and glycosylated aldoxime
using LC-MS/MS. We found amounts of p-glucosyloxyphenylacetaldoxime
to be linearly correlated with, and on average 100-fold higher (w/w)
than, those of p-hydroxyphenylacetaldoxime (Supporting Figure S5). To ensure that differences
in the average metabolite levels detected in C- and CF-expressing
plants were not caused by differences in expression of C and CF enzymes,
we also quantified the relative amounts of both proteins in total
protein extracts from infiltrated leaves by immunoblotting and found
average CF expression to be 40% that of C (Supporting Figure S6). The expression-normalized production of free and
glycosylated p-hydroxyphenylacetaldoxime showed that
the specific activity of CF is 50% higher than that of C (Figure ).
Figure 6
Relative amounts of p-hydroxyphenylacetaldoxime
and p-glucosyloxyphenylacetaldoxime extracted from N. benthamiana leaves 5 days post infiltration with Agrobacterium strains bearing plasmids encoding either C
or CF, as quantified by LC-MS/MS and normalized to relative protein
expression as determined by immunoblot. Equal numbers of leaf samples
were analyzed for p-hydroxyphenylacetaldoxime and p-glucosyloxyphenylacetaldoxime in C (n = 37) and CF (n = 40), but p-hydroxyphenylacetaldoxime
was below the level of detection in some CF samples. Error bars ±
SD. *Statistical significance (p < 0.05) according
to two-tailed unpaired t-tests.
Relative amounts of p-hydroxyphenylacetaldoxime
and p-glucosyloxyphenylacetaldoxime extracted from N. benthamiana leaves 5 days post infiltration with Agrobacterium strains bearing plasmids encoding either C
or CF, as quantified by LC-MS/MS and normalized to relative protein
expression as determined by immunoblot. Equal numbers of leaf samples
were analyzed for p-hydroxyphenylacetaldoxime and p-glucosyloxyphenylacetaldoxime in C (n = 37) and CF (n = 40), but p-hydroxyphenylacetaldoxime
was below the level of detection in some CF samples. Error bars ±
SD. *Statistical significance (p < 0.05) according
to two-tailed unpaired t-tests.
Discussion
This study reports the light-driven activity
of three fusions between
CYP79A1 and Fd and confirms the establishment of functional electron
transfer from photosystem I to the heme domain in the CF enzyme. We
expected the CΔF and FCΔ fusions
to be soluble proteins, but both associated with thylakoid membranes,
possibly via hydrophobic interactions with the F-G
loop of CYP79A1[25] and/or electrostatic
Arg and Lys interactions with membrane phospho- or sulfolipids.[29,30] The CΔF fusion was barely detectable in isolated
chloroplasts, but readily so in thylakoid membrane preparations (Figure ). The FCΔ fusion protein showed the highest expression in both chloroplast
and thylakoid preparations, but both it and CΔF gave
rise to additional immunospecific bands below the main one (Figure b and Supporting Figure S2a). Neither C nor CF, which
include the full-length CYP79A1 sequence, appeared susceptible to
proteolysis and produced single bands at the expected positions on
immunoblots (62 and 73 kDa). We conclude that truncation of CYP79A1
increases its susceptibility to chloroplast proteases, and this might
explain the reduced activities of CΔF and FCΔ. Other possible explanations are poor interaction between
Fd and P450 domains, aberrant incorporation of heme or 2Fe–2S
clusters into the truncated proteins, or poor interaction with the
PsaC, -D, and -E subunits of photosystem I, which would limit electron
transfer from its FB [4Fe–4S] cluster (see Supporting Figure S1).[31]Cytochrome P450 concentrations are commonly determined by
inhibiting
the dithionite-reduced enzyme with CO to yield a characteristic reduced-plus-CO
vs reduced difference spectrum.[32] We were
unable to detect characteristic peaks at 450 or 420 nm because the
high spectral background from pigments in the photosynthetic membrane
swamps the weak signal expected from the P450:CO adduct (data not
shown). Though CO spectra can also measure enzyme inactivation, the
presence of other hemoproteins compromises their accuracy.[32] Since thylakoid membranes contain many hemoproteins,
in particular the Cytochrome b6f complex,
the method is unlikely to be accurate in this matrix. We instead measured
activities in several independent thylakoid preparations and found
them to be highly consistent overall, indicating that inactivation
of the cytochromes does not cause major variation in this case.The CF fusion was preferentially reduced by electrons transferred
to its fused Fd domain by photosystem I ,and only a minor fraction
of its reducing power was derived from soluble Fd (Figure a). The most likely explanations
for this preference are steric hindrance by the Fd domain limiting
access of soluble Fd to the heme-proximal surface and much faster
kinetics of electron transfer from photosystem I to the CF enzyme
due to reduced dependence on diffusion. While our evidence does not
exclude other possibilities, a number of observations support this
interpretation. First, the addition of high concentrations of soluble
Fd resulted in only limited enhancement of CF activity (Figure a). Second, the same trend
was observed when FNR and NADPH were used to reduce Fd, with activities
of C and CF being equal at ∼4 μM soluble Fd in both experiments
(Figure a,b). Since
FNR is a soluble enzyme, it is not affected by steric hindrance in
the spatially highly organized environment of the thylakoid, which
consists of ∼70% (mol/mol) protein[33] and allows only limited diffusion.[34] Third,
CF activity depends on colocalization with photosystem I in the thylakoid
membrane, even when soluble Fd is present (Figure c). Solubilization of the membrane effectively
causes its constituent proteins to be diluted, which is consistent
with a decrease in activity of CF if it can only be reduced via direct interaction of its Fd domain with photosystem
I. In contrast, the concentration of soluble Fd (8.3 μM) is
unchanged by solubilization of the membrane, and therefore so also
is the activity of the C protein. Finally, the higher specific activity
of CF relative to unfused C under in vivo conditions
(Figure ) indicates
that the differences observed between C and CF in vitro relate to the specific assay conditions used. Since the concentrations
of Fd available to CF and C differ in principle, membrane colocalization
of CF with photosystem I must compensate for its inability to interact
with soluble Fd.
Figure 7
Electron transfer from photosystem I to CF independently
of soluble
Fd and competition between soluble and fused Fd for electrons in the
presence of FNR. (a) Electron transfer chains involved during catalysis
by C (left), where electrons flow from photosystem I (PSI) through
the soluble Fd pool to the P450, and CF (right), where electrons flow
from photosystem I via the Fd domain fused to the
P450. (b) Electron flow toward FNR/NADP+ vs CF in the presence
of soluble Fd (left). When soluble Fd is absent (right), more electrons
flow through the fused Fd domain of CF and consequently end up being
used for hydroxylation of Tyr; i.e., intramolecular electron transfer
is faster than transfer to FNR.
Electron transfer from photosystem I to CF independently
of soluble
Fd and competition between soluble and fused Fd for electrons in the
presence of FNR. (a) Electron transfer chains involved during catalysis
by C (left), where electrons flow from photosystem I (PSI) through
the soluble Fd pool to the P450, and CF (right), where electrons flow
from photosystem I via the Fd domain fused to the
P450. (b) Electron flow toward FNR/NADP+ vs CF in the presence
of soluble Fd (left). When soluble Fd is absent (right), more electrons
flow through the fused Fd domain of CF and consequently end up being
used for hydroxylation of Tyr; i.e., intramolecular electron transfer
is faster than transfer to FNR.Unfused C protein showed typical saturation behavior as Fd
concentrations
were increased in light- but not in FNR-driven assays (Figure a,b). This difference probably
results from slower reduction of Fd by FNR, because of thermodynamically
uphill electron transfer from NADPH (Em = −320 mV) to Fd (Em
= −433 mV).[35] From its saturation
curve in light-driven assays we estimated the KM of C for Fd to be 5.0 ± 0.6 μM. For comparison,
FNR—which consumes the majority of reduced Fd in vivo—has a KM for Fd of 2.8 μM.[35] Such a high affinity toward an unnatural interaction
partner can be rationalized by similarities between cytochrome P450
reductases (POR) and chloroplast Fd’s. POR contains a small
FMN-binding domain responsible for electron transfer to P450s, which
is structurally homologous to the small electron carrier protein flavodoxin
(Fld).[36] Since Fld and Fd act interchangeably
in some photosynthetic organisms,[37] both
carry highly negatively charged surfaces, and both interact electrostatically
with photosystem I and FNR,[38] their ability
to support catalysis by many P450s[8−11,39−41] is consistent with the hypothesis that these small
electron carrier proteins evolved to interact with proteins through
charge and surface shape complementarity in a relatively unspecific
manner.[42]The light-driven activity
of C showed a bell-shaped dependence
on ionic strength (I) (Figure a). Similar I dependences
have been reported for Fd-dependent FNR activity and for reduction
of plastocyanin by cytochrome c, and the increase in activity observed
likely reflects increased dissociation rates due to suppression of
nonspecific electrostatic interactions.[43−45] In contrast, the activity
of the CF protein showed less dependence on ionic strength, probably
because the covalent association of the interacting partners obviates
the need for long-range electrostatic steering. The CF fusion is better
able to compete with FNR for electrons (Figure b), but reduced CF activity in the presence
of soluble Fd shows that the latter competes for interaction with
photosystem I (Figure b).This work has important implications in relation to the
choice
of assay for assessment of P450-reductase fusions. Such enzymes are
often evaluated in comparison with a stoichiometric reductase:P450
mixture, which can be misleading, since in vivo reductase:P450
ratios are often far from 1,[46] and the
activities of fusion enzymes tend to increase linearly with concentration,
while differing reductase:P450 ratios show nonlinear effects on rates.[47] The choice of ionic strength is likewise important,
because high ionic strengths would favor intramolecular electron transfer
by less electrostatic-reliant fusion enzymes (Figure ). In this study, we showed that our CF fusion
can acquire more reducing power in the presence of a strong competing
electron sink than unfused C, which partly explains its increased in vivo activity. We should note, however, that in vivo concentrations of FNR and Fd (10–100 μM
and 300–800 μM, respectively, reported for chloroplasts
and cyanobacteria)[48−50] would be difficult or impossible to replicate in vitro. Consequently, we stress the importance of backing
up in vitro comparisons with in vivo experiments whenever possible.Since light-driven cytochrome
P450 pathways have key applications
in live cell-culture production systems, we compared the in
vivo activities of unfused C and the CF fusion. A preliminary
time course analysis of p-hydroxyphenylacetaldoxime
content in leaf extracts at 1–5 days post infiltration showed
levels peaking on day 3, with no significant change on the fourth
and fifth days (data not shown). The levels of C and CF proteins detected
5 days post infiltration indicated that the plants converted p-hydrophenylacetaldoxime to other compounds, and this was
confirmed by enzymatic deglycosylation of extracted metabolites (Supporting Figure S4). We found free aldoxime
to accumulate to 100-fold lower levels than, and be linearly correlated
with, its glucoside (Supporting Figure S6), which implies highly active glycosylation machinery for detoxification
of foreign compounds, such as oximes.[51,52] By quantifying
both, we demonstrated that the catalytic activity of the fusion enzyme
is superior to that of unfused CYP79A1 (Figure ), thanks to its covalent association with
Fd, thus confirming that the thylakoid membrane possesses the plasticity
required to allow interaction of heterologous enzymes with photosystem
I.This study represents the first report of enhanced light-driven
activity of a P450-reductase fusion in vivo. Improved
light-driven hydrogenase activity through Fd fusion in vitro was previously demonstrated.[53] We did
not explore the effect of linker length or composition in the present
study, but both were recently found to influence electron transfer
rates in fusions between the E. coli flavodoxin reductase
and Fld.[54] Though five residues were sufficient
to support activity of a CYP11A1-adrenodoxin fusion,[55] both studies found higher activity with longer linkers.[54,55] Assembly of a complex between the model P450cam and its
reductase system (putidaredoxin and putidaredoxin reductase) by an
alternative approach whereby they were fused with subunits of the
PCNA trimer gave a 100-fold rate increase, and this could be further
increased by optimizing the linker, further demonstrating the rate
enhancements achievable by proper linking of P450 and reductase.[56,57] Consequently, we consider it likely that our reported CF fusion
can be improved further by exploring alternate linker designs.
Conclusion
This study reports the in vitro and in
vivo effects of introducing a P450-ferredoxin
fusion protein into the thylakoid membranes of chloroplasts. The fusion
CF could obtain electrons directly from photosystem I, and its activity
was affected little by soluble Fd. The fusion enzyme also retained
higher activity in the presence of competing electron sinks, probably
because it is colocalized with photosystem I in the thylakoid membrane.
Our P450-ferredoxin fusion approach thus enables direct coupling of
photosynthetic electron transfer to P450s involved in desired biosynthetic
pathways introduced into higher plant chloroplasts, algae, or cyanobacteria.
To our knowledge, this is the first report of a fusion between a ferredoxin
and a eukaryotic P450 involved in specialized metabolism. The CF fusion
protein had a higher specific activity than unfused CYP79A1 in tobacco
leaves, but was less abundant following transient expression. Minimal
interaction between the fusion enzyme and soluble Fd makes the catalytic
activity achieved by the fusion enzyme in vivo especially
remarkable, since its fused Fd domain is present in substoichiometric
amounts relative to free Fd. Evolution has tuned the distribution
of photosynthetic reducing power to balance maximal biomass accumulation
with the necessary redox regulation of metabolic processes. Thus,
successful exploitation of photosynthetic organisms for light-driven
production of high-value specialized metabolites or biofuels such
as H2 will require strategies that modulate the distribution
of reducing power. Our work indicates that Fd fusions constitute a
transferable approach to channeling of photosynthetic reducing power
into non-native pathways.
Authors: Kenneth Jensen; Sarah Anne Osmani; Thomas Hamann; Peter Naur; Birger Lindberg Møller Journal: Phytochemistry Date: 2011-05-26 Impact factor: 4.072
Authors: Kenneth Jensen; Jonathan B Johnston; Paul R Ortiz de Montellano; Birger Lindberg Møller Journal: Biotechnol Lett Date: 2011-10-08 Impact factor: 2.461
Authors: Thiyagarajan Gnanasekaran; Konstantinos Vavitsas; Johan Andersen-Ranberg; Agnieszka Zygadlo Nielsen; Carl Erik Olsen; Björn Hamberger; Poul Erik Jensen Journal: J Biol Eng Date: 2015-12-22 Impact factor: 4.355
Authors: Joshua T Atkinson; Ian J Campbell; Emily E Thomas; Sheila C Bonitatibus; Sean J Elliott; George N Bennett; Jonathan J Silberg Journal: Nat Chem Biol Date: 2018-12-17 Impact factor: 15.040