Literature DB >> 27091107

Cargo-shell and cargo-cargo couplings govern the mechanics of artificially loaded virus-derived cages.

Aida Llauró1, Daniel Luque2, Ethan Edwards3, Benes L Trus4, John Avera3, David Reguera5, Trevor Douglas3, Pedro J de Pablo6, José R Castón7.   

Abstract

Nucleic acids are the natural cargo of viruses and key determinants that affect viral shell stability. In some cases the genome structurally reinforces the shell, whereas in others genome packaging causes internal pressure that can induce destabilization. Although it is possible to pack heterologous cargoes inside virus-derived shells, little is known about the physical determinants of these artificial nanocontainers' stability. Atomic force and three-dimensional cryo-electron microscopy provided mechanical and structural information about the physical mechanisms of viral cage stabilization beyond the mere presence/absence of cargos. We analyzed the effects of cargo-shell and cargo-cargo interactions on shell stability after encapsulating two types of proteinaceous payloads. While bound cargo to the inner capsid surface mechanically reinforced the capsid in a structural manner, unbound cargo diffusing freely within the shell cavity pressurized the cages up to ∼30 atm due to steric effects. Strong cargo-cargo coupling reduces the resilience of these nanocompartments in ∼20% when bound to the shell. Understanding the stability of artificially loaded nanocages will help to design more robust and durable molecular nanocontainers.

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Year:  2016        PMID: 27091107      PMCID: PMC4861311          DOI: 10.1039/c6nr01007e

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  56 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

Review 3.  Mechanical properties of viruses analyzed by atomic force microscopy: a virological perspective.

Authors:  Mauricio G Mateu
Journal:  Virus Res       Date:  2012-06-15       Impact factor: 3.303

4.  Mechanics of Viral Chromatin Reveals the Pressurization of Human Adenovirus.

Authors:  Alvaro Ortega-Esteban; Gabriela N Condezo; Ana J Pérez-Berná; Miguel Chillón; S Jane Flint; David Reguera; Carmen San Martín; Pedro J de Pablo
Journal:  ACS Nano       Date:  2015-10-28       Impact factor: 15.881

5.  Xmipp: An Image Processing Package for Electron Microscopy

Authors: 
Journal:  J Struct Biol       Date:  1996-10       Impact factor: 2.867

6.  Templated assembly of organic-inorganic materials using the core shell structure of the P22 bacteriophage.

Authors:  Courtney Reichhardt; Masaki Uchida; Alison O'Neil; Rui Li; Peter E Prevelige; Trevor Douglas
Journal:  Chem Commun (Camb)       Date:  2011-05-04       Impact factor: 6.222

7.  Mechanism of head assembly and DNA encapsulation in Salmonella phage p22. I. Genes, proteins, structures and DNA maturation.

Authors:  D Botstein; C H Waddell; J King
Journal:  J Mol Biol       Date:  1973-11-15       Impact factor: 5.469

8.  Subunit conformational changes accompanying bacteriophage P22 capsid maturation.

Authors:  P E Prevelige; D Thomas; K L Aubrey; S A Towse; G J Thomas
Journal:  Biochemistry       Date:  1993-01-19       Impact factor: 3.162

9.  P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks.

Authors:  Kristin N Parent; Reza Khayat; Long H Tu; Margaret M Suhanovsky; Juliana R Cortines; Carolyn M Teschke; John E Johnson; Timothy S Baker
Journal:  Structure       Date:  2010-03-10       Impact factor: 5.006

10.  Calcium ions modulate the mechanics of tomato bushy stunt virus.

Authors:  Aida Llauró; Emilia Coppari; Francesca Imperatori; Anna R Bizzarri; José R Castón; Luca Santi; Salvatore Cannistraro; Pedro J de Pablo
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

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  19 in total

1.  Loading the dice: The orientation of virus-like particles adsorbed on titanate assisted organosilanized surfaces.

Authors:  Daniel Moreno-Cerrada; Chloe Rodríguez; Francisco Moreno-Madrid; Ekaterina Selivanovitch; Trevor Douglas; Pedro J de Pablo; Miguel Manso Silván
Journal:  Biointerphases       Date:  2019-01-28       Impact factor: 2.456

2.  Mechanics of Virus-like Particles Labeled with Green Fluorescent Protein.

Authors:  Johann Mertens; Patricia Bondia; Carolina Allende-Ballestero; José L Carrascosa; Cristina Flors; José R Castón
Journal:  Biophys J       Date:  2018-09-01       Impact factor: 4.033

Review 3.  Cryo-electron microscopy for the study of virus assembly.

Authors:  Daniel Luque; José R Castón
Journal:  Nat Chem Biol       Date:  2020-02-20       Impact factor: 15.040

4.  Chemically Induced Morphogenesis of P22 Virus-like Particles by the Surfactant Sodium Dodecyl Sulfate.

Authors:  Ekaterina Selivanovitch; Ranjit Koliyatt; Trevor Douglas
Journal:  Biomacromolecules       Date:  2018-12-10       Impact factor: 6.988

5.  Monitoring SARS-CoV-2 Surrogate TGEV Individual Virions Structure Survival under Harsh Physicochemical Environments.

Authors:  Miguel Cantero; Diego Carlero; Francisco Javier Chichón; Jaime Martín-Benito; Pedro José De Pablo
Journal:  Cells       Date:  2022-05-27       Impact factor: 7.666

6.  Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.

Authors:  Álvaro Ortega-Esteban; Carlos P Mata; María J Rodríguez-Espinosa; Daniel Luque; Nerea Irigoyen; Javier M Rodríguez; Pedro J de Pablo; José R Castón
Journal:  J Virol       Date:  2020-11-23       Impact factor: 5.103

7.  Polymer Coatings on Virus-like Particle Nanoreactors at Low Ionic Strength-Charge Reversal and Substrate Access.

Authors:  Pawel Kraj; Ekaterina Selivanovitch; Byeongdu Lee; Trevor Douglas
Journal:  Biomacromolecules       Date:  2021-04-20       Impact factor: 6.988

8.  Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra.

Authors:  Farkhad Maksudov; Olga Kononova; Aida Llauró; Alvaro Ortega-Esteban; Trevor Douglas; Gabriela N Condezo; Carmen San Martín; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Pedro J de Pablo; Valeri Barsegov
Journal:  Acta Biomater       Date:  2020-12-28       Impact factor: 8.947

9.  Curating viscoelastic properties of icosahedral viruses, virus-based nanomaterials, and protein cages.

Authors:  Ravi Kant; Vamseedhar Rayaprolu; Kaitlyn McDonald; Brian Bothner
Journal:  J Biol Phys       Date:  2018-04-10       Impact factor: 1.560

10.  Direct characterization of the native structure and mechanics of cyanobacterial carboxysomes.

Authors:  Matthew Faulkner; Jorge Rodriguez-Ramos; Gregory F Dykes; Siân V Owen; Selene Casella; Deborah M Simpson; Robert J Beynon; Lu-Ning Liu
Journal:  Nanoscale       Date:  2017-08-03       Impact factor: 7.790

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