Literature DB >> 33359294

Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra.

Farkhad Maksudov1, Olga Kononova1, Aida Llauró2, Alvaro Ortega-Esteban2, Trevor Douglas3, Gabriela N Condezo4, Carmen San Martín4, Kenneth A Marx1, Gijs J L Wuite5, Wouter H Roos6, Pedro J de Pablo7, Valeri Barsegov8.   

Abstract

We developed the Fluctuating Nonlinear Spring (FNS) model to describe the dynamics of mechanical deformation of biological particles, such as virus capsids. The theory interprets the force-deformation spectra in terms of the "Hertzian stiffness" (non-linear regime of a particle's small-amplitude deformations), elastic constant (large-amplitude elastic deformations), and force range in which the particle's fracture occurs. The FNS theory enables one to quantify the particles' elasticity (Young's moduli for Hertzian and bending deformations), and the limits of their strength (critical forces, fracture toughness) and deformability (critical deformations) as well as the probability distributions of these properties, and to calculate the free energy changes for the particle's Hertzian, elastic, and plastic deformations, and eventual fracture. We applied the FNS theory to describe the protein capsids of bacteriophage P22, Human Adenovirus, and Herpes Simplex virus characterized by deformations before fracture that did not exceed 10-19% of their size. These nanoshells are soft (~1-10-GPa elastic modulus), with low ~50-480-kPa toughness - a regime of material behavior that is not well understood, and with the strength increasing while toughness decreases with their size. The particles' fracture is stochastic, with the average values of critical forces, critical deformations, and fracture toughness comparable with their standard deviations. The FNS theory predicts 0.7-MJ/mol free energy for P22 capsid maturation, and it could be extended to describe uniaxial deformation of cylindrical microtubules and ellipsoidal cellular organelles.
Copyright © 2020. Published by Elsevier Ltd.

Entities:  

Keywords:  Fluctuating nonlinear spring (FNS) model; Force-deformation spectra; Fracture toughness; Probability distribution of critical deformations; Probability distribution of critical forces

Mesh:

Year:  2020        PMID: 33359294      PMCID: PMC7897321          DOI: 10.1016/j.actbio.2020.12.043

Source DB:  PubMed          Journal:  Acta Biomater        ISSN: 1742-7061            Impact factor:   8.947


  55 in total

1.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

2.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

3.  Minimizing tip-sample forces in jumping mode atomic force microscopy in liquid.

Authors:  A Ortega-Esteban; I Horcas; M Hernando-Pérez; P Ares; A J Pérez-Berná; C San Martín; J L Carrascosa; P J de Pablo; J Gómez-Herrero
Journal:  Ultramicroscopy       Date:  2012-01-20       Impact factor: 2.689

4.  Probing the impact of loading rate on the mechanical properties of viral nanoparticles.

Authors:  J Snijder; I L Ivanovska; M Baclayon; W H Roos; G J L Wuite
Journal:  Micron       Date:  2012-04-27       Impact factor: 2.251

5.  Mechanics of Viral Chromatin Reveals the Pressurization of Human Adenovirus.

Authors:  Alvaro Ortega-Esteban; Gabriela N Condezo; Ana J Pérez-Berná; Miguel Chillón; S Jane Flint; David Reguera; Carmen San Martín; Pedro J de Pablo
Journal:  ACS Nano       Date:  2015-10-28       Impact factor: 15.881

6.  Integrin and defensin modulate the mechanical properties of adenovirus.

Authors:  Joost Snijder; Vijay S Reddy; Eric R May; Wouter H Roos; Glen R Nemerow; Gijs J L Wuite
Journal:  J Virol       Date:  2012-12-26       Impact factor: 5.103

Review 7.  Atomic force microscopy observation and characterization of single virions and virus-like particles by nano-indentation.

Authors:  M Marchetti; Gjl Wuite; W H Roos
Journal:  Curr Opin Virol       Date:  2016-05-30       Impact factor: 7.090

8.  The tripartite virions of the brome mosaic virus have distinct physical properties that affect the timing of the infection process.

Authors:  Robert Vaughan; Brady Tragesser; Peng Ni; Xiang Ma; Bogdan Dragnea; C Cheng Kao
Journal:  J Virol       Date:  2014-03-26       Impact factor: 5.103

9.  Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks.

Authors:  Hongrong Liu; Lei Jin; Sok Boon S Koh; Ivo Atanasov; Stan Schein; Lily Wu; Z Hong Zhou
Journal:  Science       Date:  2010-08-27       Impact factor: 47.728

10.  Biophysical properties of single rotavirus particles account for the functions of protein shells in a multilayered virus.

Authors:  Manuel Jiménez-Zaragoza; Marina Pl Yubero; Esther Martín-Forero; Jose R Castón; David Reguera; Daniel Luque; Pedro J de Pablo; Javier M Rodríguez
Journal:  Elife       Date:  2018-09-11       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.