Literature DB >> 27043933

Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword.

Malgorzata Jaszczur1, Jeffrey G Bertram1, Andrew Robinson2, Antoine M van Oijen2, Roger Woodgate3, Michael M Cox4, Myron F Goodman1,5.   

Abstract

1953, the year of Watson and Crick, bore witness to a less acclaimed yet highly influential discovery. Jean Weigle demonstrated that upon infection of Escherichia coli, λ phage deactivated by UV radiation, and thus unable to form progeny, could be reactivated by irradiation of the bacterial host. Evelyn Witkin and Miroslav Radman later revealed the presence of the SOS regulon. The more than 40 regulon genes are repressed by LexA protein and induced by the coproteolytic cleavage of LexA, catalyzed by RecA protein bound to single-stranded DNA, the RecA* nucleoprotein filament. Several SOS-induced proteins are engaged in repairing both cellular and extracellular damaged DNA. There's no "free lunch", however, because error-free repair is accompanied by error-prone translesion DNA synthesis (TLS), involving E. coli DNA polymerase V (UmuD'2C) and RecA*. This review describes the biochemical mechanisms of pol V-mediated TLS. pol V is active only as a mutasomal complex, pol V Mut = UmuD'2C-RecA-ATP. RecA* donates a single RecA subunit to pol V. We highlight three recent insights. (1) pol V Mut has an intrinsic DNA-dependent ATPase activity that governs polymerase binding and dissociation from DNA. (2) Active and inactive states of pol V Mut are determined at least in part by the distinct interactions between RecA and UmuC. (3) pol V is activated by RecA*, not at a blocked replisome, but at the inner cell membrane.

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Year:  2016        PMID: 27043933      PMCID: PMC4846499          DOI: 10.1021/acs.biochem.6b00117

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  70 in total

1.  Activity of the purified mutagenesis proteins UmuC, UmuD', and RecA in replicative bypass of an abasic DNA lesion by DNA polymerase III.

Authors:  M Rajagopalan; C Lu; R Woodgate; M O'Donnell; M F Goodman; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

Review 2.  Mutation induced by DNA damage: a many protein affair.

Authors:  H Echols; M F Goodman
Journal:  Mutat Res       Date:  1990 Sep-Nov       Impact factor: 2.433

3.  UmuC mutagenesis protein of Escherichia coli: purification and interaction with UmuD and UmuD'.

Authors:  R Woodgate; M Rajagopalan; C Lu; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

4.  RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation.

Authors:  T Nohmi; J R Battista; L A Dodson; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

5.  RecA protein of Escherichia coli has a third essential role in SOS mutator activity.

Authors:  J B Sweasy; E M Witkin; N Sinha; V Roegner-Maniscalco
Journal:  J Bacteriol       Date:  1990-06       Impact factor: 3.490

6.  Levels of chromosomally encoded Umu proteins and requirements for in vivo UmuD cleavage.

Authors:  R Woodgate; D G Ennis
Journal:  Mol Gen Genet       Date:  1991-09

Review 7.  Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues.

Authors:  R Woodgate; S G Sedgwick
Journal:  Mol Microbiol       Date:  1992-08       Impact factor: 3.501

8.  UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA.

Authors:  S E Burckhardt; R Woodgate; R H Scheuermann; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

9.  RecA protein-dependent cleavage of UmuD protein and SOS mutagenesis.

Authors:  H Shinagawa; H Iwasaki; T Kato; A Nakata
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

10.  New recA mutations that dissociate the various RecA protein activities in Escherichia coli provide evidence for an additional role for RecA protein in UV mutagenesis.

Authors:  M Dutreix; P L Moreau; A Bailone; F Galibert; J R Battista; G C Walker; R Devoret
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

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  14 in total

1.  Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response.

Authors:  Harshad Ghodke; Bishnu P Paudel; Jacob S Lewis; Slobodan Jergic; Kamya Gopal; Zachary J Romero; Elizabeth A Wood; Roger Woodgate; Michael M Cox; Antoine M van Oijen
Journal:  Elife       Date:  2019-02-05       Impact factor: 8.140

2.  New complexities of SOS-induced "untargeted" mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing.

Authors:  Brittany A Niccum; Christopher P Coplen; Heewook Lee; Wazim Mohammed Ismail; Haixu Tang; Patricia L Foster
Journal:  DNA Repair (Amst)       Date:  2020-04-18

3.  Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391.

Authors:  Erin Walsh; Sarah S Henrikus; Alexandra Vaisman; Karolina Makiela-Dzbenska; Thomas J Armstrong; Krystian Łazowski; John P McDonald; Myron F Goodman; Antoine M van Oijen; Piotr Jonczyk; Iwona J Fijalkowska; Andrew Robinson; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2019-08-10

4.  Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair.

Authors:  Sarah S Henrikus; Camille Henry; Amy E McGrath; Slobodan Jergic; John P McDonald; Yvonne Hellmich; Steven T Bruckbauer; Matthew L Ritger; Megan E Cherry; Elizabeth A Wood; Phuong T Pham; Myron F Goodman; Roger Woodgate; Michael M Cox; Antoine M van Oijen; Harshad Ghodke; Andrew Robinson
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

5.  Betulinic Acid Prevents the Acquisition of Ciprofloxacin-Mediated Mutagenesis in Staphylococcus aureus.

Authors:  Alexsander Rodrigues Carvalho Junior; Arthur Lima de Berredo Martins; Brenda da Silva Cutrim; Deivid Martins Santos; Hermerson Sousa Maia; Mari Silma Maia da Silva; Adrielle Zagmignan; Maria Raimunda Chagas Silva; Cristina de Andrade Monteiro; Giselle Maria Skelding Pinheiro Guilhon; Antônio José Cantanhede Filho; Luís Cláudio Nascimento da Silva
Journal:  Molecules       Date:  2019-05-07       Impact factor: 4.411

6.  New insights into the structures and interactions of bacterial Y-family DNA polymerases.

Authors:  Kęstutis Timinskas; Česlovas Venclovas
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

Review 7.  The SOS system: A complex and tightly regulated response to DNA damage.

Authors:  Katarzyna H Maslowska; Karolina Makiela-Dzbenska; Iwona J Fijalkowska
Journal:  Environ Mol Mutagen       Date:  2019-01-07       Impact factor: 3.216

Review 8.  Visualizing mutagenic repair: novel insights into bacterial translesion synthesis.

Authors:  Asha Mary Joseph; Anjana Badrinarayanan
Journal:  FEMS Microbiol Rev       Date:  2020-09-01       Impact factor: 16.408

9.  ImuA Facilitates SOS Mutagenesis by Inhibiting RecA-Mediated Activity in Myxococcus xanthus.

Authors:  Duohong Sheng; Ye Wang; Zhiwei Jiang; Dongkai Liu; Yuezhong Li
Journal:  Appl Environ Microbiol       Date:  2021-08-26       Impact factor: 4.792

Review 10.  Antibiotic-Induced Mutagenesis: Under the Microscope.

Authors:  Sarah A Revitt-Mills; Andrew Robinson
Journal:  Front Microbiol       Date:  2020-10-22       Impact factor: 5.640

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