Literature DB >> 27038268

In Situ Proteolysis for Crystallization of Membrane Bound Cytochrome P450 17A1 and 17A2 Proteins from Zebrafish.

Li Lei1, Martin Egli1.   

Abstract

Fish and human cytochrome P450 (P450) 17A1 catalyze both steroid 17α-hydroxylation and 17α,20-lyase reactions. Fish P450 17A2 catalyzes only 17α-hydroxylation. Both enzymes are microsomal-type P450s, integral membrane proteins that bind to the membrane through their N-terminal hydrophobic segment, the signal anchor sequence. The presence of this N-terminal region renders expression of full-length proteins challenging or impossible. For some proteins, variable truncation of the signal anchor sequence precludes expression or results in poor expression levels. To crystallize P450 17A1 and 17A2 in order to gain insight into their different activities, we used an alternative N-terminal sequence to boost expression together with in situ proteolysis. Key features of our approach to identify crystallizable P450 fragments were the use of an N-terminal leader sequence, a screen composed of 12 proteases to establish optimal cleavage, variations of protease concentration in combination with an SDS-PAGE assay, and analysis of the resulting fragments using Edman sequencing. Described in this unit are protocols for vector preparation, expression, purification, and in situ proteolytic crystallization of two membrane-bound P450 proteins.
Copyright © 2016 John Wiley & Sons, Inc.

Entities:  

Keywords:  crystallization; in situ proteolysis; membrane protein

Mesh:

Substances:

Year:  2016        PMID: 27038268      PMCID: PMC4831947          DOI: 10.1002/0471140864.ps2916s84

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  24 in total

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Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Preliminary X-ray analysis of a human V(H) fragment at 1.8 A resolution.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

3.  Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases.

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Journal:  EMBO J       Date:  2006-01-05       Impact factor: 11.598

4.  Purification of cytochromes P450: products of bacterial recombinant expression systems.

Authors:  F Peter Guengerich; Martha V Martin
Journal:  Methods Mol Biol       Date:  2006

5.  The use of in situ proteolysis in the crystallization of murine CstF-77.

Authors:  Yun Bai; Thierry C Auperin; Liang Tong
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-27

6.  A serendipitous discovery that in situ proteolysis is essential for the crystallization of yeast CPSF-100 (Ydh1p).

Authors:  Corey R Mandel; Damara Gebauer; Hailong Zhang; Liang Tong
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-30

7.  Human Cytochrome P450 21A2, the Major Steroid 21-Hydroxylase: STRUCTURE OF THE ENZYME·PROGESTERONE SUBSTRATE COMPLEX AND RATE-LIMITING C-H BOND CLEAVAGE.

Authors:  Pradeep S Pallan; Chunxue Wang; Li Lei; Francis K Yoshimoto; Richard J Auchus; Michael R Waterman; F Peter Guengerich; Martin Egli
Journal:  J Biol Chem       Date:  2015-04-08       Impact factor: 5.157

8.  In situ proteolysis for protein crystallization and structure determination.

Authors:  Aiping Dong; Xiaohui Xu; Aled M Edwards; Changsoo Chang; Maksymilian Chruszcz; Marianne Cuff; Marcin Cymborowski; Rosa Di Leo; Olga Egorova; Elena Evdokimova; Ekaterina Filippova; Jun Gu; Jennifer Guthrie; Alexandr Ignatchenko; Andrzej Joachimiak; Natalie Klostermann; Youngchang Kim; Yuri Korniyenko; Wladek Minor; Qiuni Que; Alexei Savchenko; Tatiana Skarina; Kemin Tan; Alexander Yakunin; Adelinda Yee; Veronica Yim; Rongguang Zhang; Hong Zheng; Masato Akutsu; Cheryl Arrowsmith; George V Avvakumov; Alexey Bochkarev; Lars-Göran Dahlgren; Sirano Dhe-Paganon; Slav Dimov; Ludmila Dombrovski; Patrick Finerty; Susanne Flodin; Alex Flores; Susanne Gräslund; Martin Hammerström; Maria Dolores Herman; Bum-Soo Hong; Raymond Hui; Ida Johansson; Yongson Liu; Martina Nilsson; Lyudmila Nedyalkova; Pär Nordlund; Tomas Nyman; Jinrong Min; Hui Ouyang; Hee-won Park; Chao Qi; Wael Rabeh; Limin Shen; Yang Shen; Deepthi Sukumard; Wolfram Tempel; Yufeng Tong; Lionel Tresagues; Masoud Vedadi; John R Walker; Johan Weigelt; Martin Welin; Hong Wu; Ting Xiao; Hong Zeng; Haizhong Zhu
Journal:  Nat Methods       Date:  2007-11-04       Impact factor: 28.547

9.  A universal approach to the expression of human and rabbit cytochrome P450s of the 2C subfamily in Escherichia coli.

Authors:  T H Richardson; F Jung; K J Griffin; M Wester; J L Raucy; B Kemper; L M Bornheim; C Hassett; C J Omiecinski; E F Johnson
Journal:  Arch Biochem Biophys       Date:  1995-10-20       Impact factor: 4.013

10.  Expression, limited proteolysis and preliminary crystallographic analysis of IpaD, a component of the Shigella flexneri type III secretion system.

Authors:  Steven Johnson; Pietro Roversi; Marianela Espina; Janet E Deane; Susan Birket; William D Picking; Ariel Blocker; Wendy L Picking; Susan M Lea
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-08-11
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  3 in total

Review 1.  Diffraction Techniques in Structural Biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2016-06-01

2.  Inherent steroid 17α,20-lyase activity in defunct cytochrome P450 17A enzymes.

Authors:  Eric Gonzalez; Kevin M Johnson; Pradeep S Pallan; Thanh T N Phan; Wei Zhang; Li Lei; Zdzislaw Wawrzak; Francis K Yoshimoto; Martin Egli; F Peter Guengerich
Journal:  J Biol Chem       Date:  2017-12-06       Impact factor: 5.157

3.  In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices.

Authors:  Yichen Zhang; Shu Wang; Zongchao Jia
Journal:  Int J Mol Sci       Date:  2020-01-02       Impact factor: 5.923

  3 in total

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