Literature DB >> 17982461

In situ proteolysis for protein crystallization and structure determination.

Aiping Dong1, Xiaohui Xu, Aled M Edwards, Changsoo Chang, Maksymilian Chruszcz, Marianne Cuff, Marcin Cymborowski, Rosa Di Leo, Olga Egorova, Elena Evdokimova, Ekaterina Filippova, Jun Gu, Jennifer Guthrie, Alexandr Ignatchenko, Andrzej Joachimiak, Natalie Klostermann, Youngchang Kim, Yuri Korniyenko, Wladek Minor, Qiuni Que, Alexei Savchenko, Tatiana Skarina, Kemin Tan, Alexander Yakunin, Adelinda Yee, Veronica Yim, Rongguang Zhang, Hong Zheng, Masato Akutsu, Cheryl Arrowsmith, George V Avvakumov, Alexey Bochkarev, Lars-Göran Dahlgren, Sirano Dhe-Paganon, Slav Dimov, Ludmila Dombrovski, Patrick Finerty, Susanne Flodin, Alex Flores, Susanne Gräslund, Martin Hammerström, Maria Dolores Herman, Bum-Soo Hong, Raymond Hui, Ida Johansson, Yongson Liu, Martina Nilsson, Lyudmila Nedyalkova, Pär Nordlund, Tomas Nyman, Jinrong Min, Hui Ouyang, Hee-won Park, Chao Qi, Wael Rabeh, Limin Shen, Yang Shen, Deepthi Sukumard, Wolfram Tempel, Yufeng Tong, Lionel Tresagues, Masoud Vedadi, John R Walker, Johan Weigelt, Martin Welin, Hong Wu, Ting Xiao, Hong Zeng, Haizhong Zhu.   

Abstract

We tested the general applicability of in situ proteolysis to form protein crystals suitable for structure determination by adding a protease (chymotrypsin or trypsin) digestion step to crystallization trials of 55 bacterial and 14 human proteins that had proven recalcitrant to our best efforts at crystallization or structure determination. This is a work in progress; so far we determined structures of 9 bacterial proteins and the human aminoimidazole ribonucleotide synthetase (AIRS) domain.

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Year:  2007        PMID: 17982461      PMCID: PMC3366506          DOI: 10.1038/nmeth1118

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  15 in total

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2.  Use of limited proteolysis to identify protein domains suitable for structural analysis.

Authors:  Chris M Koth; Stephen M Orlicky; Stephan M Larson; Aled M Edwards
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  Preliminary X-ray analysis of a human V(H) fragment at 1.8 A resolution.

Authors:  Rajneesh Kumar Gaur; Michael B Kupper; Rainer Fischer; Kurt M V Hoffmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

4.  Crystallographic structure studies of an IgG molecule and an Fc fragment.

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5.  The use of in situ proteolysis in the crystallization of murine CstF-77.

Authors:  Yun Bai; Thierry C Auperin; Liang Tong
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-27

6.  Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry.

Authors:  S L Cohen; A R Ferré-D'Amaré; S K Burley; B T Chait
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7.  Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA 1.

Authors:  A Bochkarev; J A Barwell; R A Pfuetzner; W Furey; A M Edwards; L Frappier
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10.  Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.

Authors:  M R Sawaya; H Pelletier; A Kumar; S H Wilson; J Kraut
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

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  128 in total

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9.  Protein purification and crystallization artifacts: The tale usually not told.

Authors:  Ewa Niedzialkowska; Olga Gasiorowska; Katarzyna B Handing; Karolina A Majorek; Przemyslaw J Porebski; Ivan G Shabalin; Ewelina Zasadzinska; Marcin Cymborowski; Wladek Minor
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10.  Discrete and structurally unique proteins (tāpirins) mediate attachment of extremely thermophilic Caldicellulosiruptor species to cellulose.

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