Srikanth Ryali1, Tianwen Chen2, Kaustubh Supekar2, Tao Tu2, John Kochalka2, Weidong Cai2, Vinod Menon3. 1. Department of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States. Electronic address: sryali@stanford.edu. 2. Department of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States. 3. Department of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States; Department of Neurology & Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States; Stanford Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305, United States. Electronic address: menon@stanford.edu.
Abstract
BACKGROUND: Causal estimation methods are increasingly being used to investigate functional brain networks in fMRI, but there are continuing concerns about the validity of these methods. NEW METHOD: Multivariate dynamical systems (MDS) is a state-space method for estimating dynamic causal interactions in fMRI data. Here we validate MDS using benchmark simulations as well as simulations from a more realistic stochastic neurophysiological model. Finally, we applied MDS to investigate dynamic casual interactions in a fronto-cingulate-parietal control network using human connectome project (HCP) data acquired during performance of a working memory task. Crucially, since the ground truth in experimental data is unknown, we conducted novel stability analysis to determine robust causal interactions within this network. RESULTS: MDS accurately recovered dynamic causal interactions with an area under receiver operating characteristic (AUC) above 0.7 for benchmark datasets and AUC above 0.9 for datasets generated using the neurophysiological model. In experimental fMRI data, bootstrap procedures revealed a stable pattern of causal influences from the anterior insula to other nodes of the fronto-cingulate-parietal network. COMPARISON WITH EXISTING METHODS: MDS is effective in estimating dynamic causal interactions in both the benchmark and neurophysiological model based datasets in terms of AUC, sensitivity and false positive rates. CONCLUSIONS: Our findings demonstrate that MDS can accurately estimate causal interactions in fMRI data. Neurophysiological models and stability analysis provide a general framework for validating computational methods designed to estimate causal interactions in fMRI. The right anterior insula functions as a causal hub during working memory.
BACKGROUND: Causal estimation methods are increasingly being used to investigate functional brain networks in fMRI, but there are continuing concerns about the validity of these methods. NEW METHOD: Multivariate dynamical systems (MDS) is a state-space method for estimating dynamic causal interactions in fMRI data. Here we validate MDS using benchmark simulations as well as simulations from a more realistic stochastic neurophysiological model. Finally, we applied MDS to investigate dynamic casual interactions in a fronto-cingulate-parietal control network using human connectome project (HCP) data acquired during performance of a working memory task. Crucially, since the ground truth in experimental data is unknown, we conducted novel stability analysis to determine robust causal interactions within this network. RESULTS:MDS accurately recovered dynamic causal interactions with an area under receiver operating characteristic (AUC) above 0.7 for benchmark datasets and AUC above 0.9 for datasets generated using the neurophysiological model. In experimental fMRI data, bootstrap procedures revealed a stable pattern of causal influences from the anterior insula to other nodes of the fronto-cingulate-parietal network. COMPARISON WITH EXISTING METHODS:MDS is effective in estimating dynamic causal interactions in both the benchmark and neurophysiological model based datasets in terms of AUC, sensitivity and false positive rates. CONCLUSIONS: Our findings demonstrate that MDS can accurately estimate causal interactions in fMRI data. Neurophysiological models and stability analysis provide a general framework for validating computational methods designed to estimate causal interactions in fMRI. The right anterior insula functions as a causal hub during working memory.
Authors: Deanna M Barch; Gregory C Burgess; Michael P Harms; Steven E Petersen; Bradley L Schlaggar; Maurizio Corbetta; Matthew F Glasser; Sandra Curtiss; Sachin Dixit; Cindy Feldt; Dan Nolan; Edward Bryant; Tucker Hartley; Owen Footer; James M Bjork; Russ Poldrack; Steve Smith; Heidi Johansen-Berg; Abraham Z Snyder; David C Van Essen Journal: Neuroimage Date: 2013-05-16 Impact factor: 6.556
Authors: Jonathan Schiefer; Alexander Niederbühl; Volker Pernice; Carolin Lennartz; Jürgen Hennig; Pierre LeVan; Stefan Rotter Journal: PLoS Comput Biol Date: 2018-03-26 Impact factor: 4.475