Literature DB >> 21944999

Inference of Granger causal time-dependent influences in noisy multivariate time series.

Linda Sommerlade1, Marco Thiel, Bettina Platt, Andrea Plano, Gernot Riedel, Celso Grebogi, Jens Timmer, Björn Schelter.   

Abstract

Inferring Granger-causal interactions between processes promises deeper insights into mechanisms underlying network phenomena, e.g. in the neurosciences where the level of connectivity in neural networks is of particular interest. Renormalized partial directed coherence has been introduced as a means to investigate Granger causality in such multivariate systems. A major challenge in estimating respective coherences is a reliable parameter estimation of vector autoregressive processes. We discuss two shortcomings typical in relevant applications, i.e. non-stationarity of the processes generating the time series and contamination with observational noise. To overcome both, we present a new approach by combining renormalized partial directed coherence with state space modeling. A numerical efficient way to perform both the estimation as well as the statistical inference will be presented.
Copyright © 2011 Elsevier B.V. All rights reserved.

Mesh:

Year:  2011        PMID: 21944999     DOI: 10.1016/j.jneumeth.2011.08.042

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  12 in total

1.  Extracting neuronal functional network dynamics via adaptive Granger causality analysis.

Authors:  Alireza Sheikhattar; Sina Miran; Ji Liu; Jonathan B Fritz; Shihab A Shamma; Patrick O Kanold; Behtash Babadi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

2.  Multivariate dynamical systems-based estimation of causal brain interactions in fMRI: Group-level validation using benchmark data, neurophysiological models and human connectome project data.

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Journal:  J Neurosci Methods       Date:  2016-03-22       Impact factor: 2.390

3.  Spatio-temporal Granger causality: a new framework.

Authors:  Qiang Luo; Wenlian Lu; Wei Cheng; Pedro A Valdes-Sosa; Xiaotong Wen; Mingzhou Ding; Jianfeng Feng
Journal:  Neuroimage       Date:  2013-05-03       Impact factor: 6.556

4.  Measuring connectivity in linear multivariate processes: definitions, interpretation, and practical analysis.

Authors:  Luca Faes; Silvia Erla; Giandomenico Nollo
Journal:  Comput Math Methods Med       Date:  2012-05-14       Impact factor: 2.238

5.  Granger causal time-dependent source connectivity in the somatosensory network.

Authors:  Lin Gao; Linda Sommerlade; Brian Coffman; Tongsheng Zhang; Julia M Stephen; Dichen Li; Jue Wang; Celso Grebogi; Bjoern Schelter
Journal:  Sci Rep       Date:  2015-05-21       Impact factor: 4.379

6.  Influence analysis for high-dimensional time series with an application to epileptic seizure onset zone detection.

Authors:  Christoph Flamm; Andreas Graef; Susanne Pirker; Christoph Baumgartner; Manfred Deistler
Journal:  J Neurosci Methods       Date:  2013-01-24       Impact factor: 2.390

7.  Quantifying network properties in multi-electrode recordings: spatiotemporal characterization and inter-trial variation of evoked gamma oscillations in mouse somatosensory cortex in vitro.

Authors:  Cristian Carmeli; Paolo Bonifazi; Hugh P C Robinson; Michael Small
Journal:  Front Comput Neurosci       Date:  2013-10-16       Impact factor: 2.380

8.  Granger causality revisited.

Authors:  Karl J Friston; André M Bastos; Ashwini Oswal; Bernadette van Wijk; Craig Richter; Vladimir Litvak
Journal:  Neuroimage       Date:  2014-07-05       Impact factor: 6.556

9.  Causal Inference Based on the Analysis of Events of Relations for Non-stationary Variables.

Authors:  Yu Yin; Dezhong Yao
Journal:  Sci Rep       Date:  2016-07-08       Impact factor: 4.379

10.  Detection of time-, frequency- and direction-resolved communication within brain networks.

Authors:  Barry Crouch; Linda Sommerlade; Peter Veselcic; Gernot Riedel; Björn Schelter; Bettina Platt
Journal:  Sci Rep       Date:  2018-01-29       Impact factor: 4.379

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