Literature DB >> 18518037

Kernel method for nonlinear granger causality.

Daniele Marinazzo1, Mario Pellicoro, Sebastiano Stramaglia.   

Abstract

Important information on the structure of complex systems can be obtained by measuring to what extent the individual components exchange information among each other. The linear Granger approach, to detect cause-effect relationships between time series, has emerged in recent years as a leading statistical technique to accomplish this task. Here we generalize Granger causality to the nonlinear case using the theory of reproducing kernel Hilbert spaces. Our method performs linear Granger causality in the feature space of suitable kernel functions, assuming arbitrary degree of nonlinearity. We develop a new strategy to cope with the problem of overfitting, based on the geometry of reproducing kernel Hilbert spaces. Applications to coupled chaotic maps and physiological data sets are presented.

Mesh:

Year:  2008        PMID: 18518037     DOI: 10.1103/PhysRevLett.100.144103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  41 in total

1.  Information Flow Between Resting-State Networks.

Authors:  Ibai Diez; Asier Erramuzpe; Iñaki Escudero; Beatriz Mateos; Alberto Cabrera; Daniele Marinazzo; Ernesto J Sanz-Arigita; Sebastiano Stramaglia; Jesus M Cortes Diaz
Journal:  Brain Connect       Date:  2015-07-24

2.  Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe.

Authors:  Xiaojie Qiu; Arman Rahimzamani; Li Wang; Bingcheng Ren; Qi Mao; Timothy Durham; José L McFaline-Figueroa; Lauren Saunders; Cole Trapnell; Sreeram Kannan
Journal:  Cell Syst       Date:  2020-03-04       Impact factor: 10.304

3.  Globally conditioned Granger causality in brain-brain and brain-heart interactions: a combined heart rate variability/ultra-high-field (7 T) functional magnetic resonance imaging study.

Authors:  Andrea Duggento; Marta Bianciardi; Luca Passamonti; Lawrence L Wald; Maria Guerrisi; Riccardo Barbieri; Nicola Toschi
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-05-13       Impact factor: 4.226

4.  Multivariate dynamical systems-based estimation of causal brain interactions in fMRI: Group-level validation using benchmark data, neurophysiological models and human connectome project data.

Authors:  Srikanth Ryali; Tianwen Chen; Kaustubh Supekar; Tao Tu; John Kochalka; Weidong Cai; Vinod Menon
Journal:  J Neurosci Methods       Date:  2016-03-22       Impact factor: 2.390

5.  Electrophysiological Brain Connectivity: Theory and Implementation.

Authors:  Bin He; Laura Astolfi; Pedro A Valdes-Sosa; Daniele Marinazzo; Satu Palva; Christian G Benar; Christoph M Michel; Thomas Koenig
Journal:  IEEE Trans Biomed Eng       Date:  2019-05-07       Impact factor: 4.538

6.  Nonlinear Structural Vector Autoregressive Models with Application to Directed Brain Networks.

Authors:  Yanning Shen; Georgios B Giannakis; Brian Baingana
Journal:  IEEE Trans Signal Process       Date:  2019-09-11       Impact factor: 4.931

7.  Low-dimensional approximation searching strategy for transfer entropy from non-uniform embedding.

Authors:  Jian Zhang
Journal:  PLoS One       Date:  2018-03-16       Impact factor: 3.240

8.  Denoising neural data with state-space smoothing: method and application.

Authors:  Hariharan Nalatore; Mingzhou Ding; Govindan Rangarajan
Journal:  J Neurosci Methods       Date:  2009-01-22       Impact factor: 2.390

Review 9.  Altered processing of sensory stimuli in patients with migraine.

Authors:  Marina de Tommaso; Anna Ambrosini; Filippo Brighina; Gianluca Coppola; Armando Perrotta; Francesco Pierelli; Giorgio Sandrini; Massimiliano Valeriani; Daniele Marinazzo; Sebastiano Stramaglia; Jean Schoenen
Journal:  Nat Rev Neurol       Date:  2014-02-18       Impact factor: 42.937

10.  Dynamic Granger causality based on Kalman filter for evaluation of functional network connectivity in fMRI data.

Authors:  Martin Havlicek; Jiri Jan; Milan Brazdil; Vince D Calhoun
Journal:  Neuroimage       Date:  2010-06-01       Impact factor: 6.556

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