Literature DB >> 27006503

Unique coupling of mono- and dioxygenase chemistries in a single active site promotes heme degradation.

Toshitaka Matsui1, Shusuke Nambu2, Celia W Goulding3, Satoshi Takahashi2, Hiroshi Fujii4, Masao Ikeda-Saito1.   

Abstract

Bacterial pathogens must acquire host iron for survival and colonization. Because free iron is restricted in the host, numerous pathogens have evolved to overcome this limitation by using a family of monooxygenases that mediate the oxidative cleavage of heme into biliverdin, carbon monoxide, and iron. However, the etiological agent of tuberculosis, Mycobacterium tuberculosis, accomplishes this task without generating carbon monoxide, which potentially induces its latent state. Here we show that this unusual heme degradation reaction proceeds through sequential mono- and dioxygenation events within the single active center of MhuD, a mechanism unparalleled in enzyme catalysis. A key intermediate of the MhuD reaction is found to be meso-hydroxyheme, which reacts with O2 at an unusual position to completely suppress its monooxygenation but to allow ring cleavage through dioxygenation. This mechanistic change, possibly due to heavy steric deformation of hydroxyheme, rationally explains the unique heme catabolites of MhuD. Coexistence of mechanistically distinct functions is a previously unidentified strategy to expand the physiological outcome of enzymes, and may be applied to engineer unique biocatalysts.

Entities:  

Keywords:  MhuD; Mycobacterium tuberculosis; dioxygenation; heme degradation; monooxygenation

Mesh:

Substances:

Year:  2016        PMID: 27006503      PMCID: PMC4833273          DOI: 10.1073/pnas.1523333113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Cytochrome P450 compound I: capture, characterization, and C-H bond activation kinetics.

Authors:  Jonathan Rittle; Michael T Green
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

2.  Roles of distal Asp in heme oxygenase from Corynebacterium diphtheriae, HmuO: A water-driven oxygen activation mechanism.

Authors:  Toshitaka Matsui; Momoko Furukawa; Masaki Unno; Takeshi Tomita; Masao Ikeda-Saito
Journal:  J Biol Chem       Date:  2004-11-04       Impact factor: 5.157

Review 3.  Mechanism of free radical oxygenation of polyunsaturated fatty acids by cyclooxygenases.

Authors:  Carol A Rouzer; Lawrence J Marnett
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

4.  The assay of catalases and peroxidases.

Authors:  A C MAEHLY; B CHANCE
Journal:  Methods Biochem Anal       Date:  1954

5.  The IsdG-family of haem oxygenases degrades haem to a novel chromophore.

Authors:  Michelle L Reniere; Georgia N Ukpabi; S Reese Harry; Donald F Stec; Robert Krull; David W Wright; Brian O Bachmann; Michael E Murphy; Eric P Skaar
Journal:  Mol Microbiol       Date:  2010-02-17       Impact factor: 3.501

6.  Rat liver heme oxygenase. High level expression of a truncated soluble form and nature of the meso-hydroxylating species.

Authors:  A Wilks; P R Ortiz de Montellano
Journal:  J Biol Chem       Date:  1993-10-25       Impact factor: 5.157

7.  A protein radical and ferryl intermediates are generated by linoleate diol synthase, a ferric hemeprotein with dioxygenase and hydroperoxide isomerase activities.

Authors:  C Su; M Sahlin; E H Oliw
Journal:  J Biol Chem       Date:  1998-08-14       Impact factor: 5.157

8.  Crystal structure of human indoleamine 2,3-dioxygenase: catalytic mechanism of O2 incorporation by a heme-containing dioxygenase.

Authors:  Hiroshi Sugimoto; Shun-ichiro Oda; Takashi Otsuki; Tomoya Hino; Tadashi Yoshida; Yoshitsugu Shiro
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

9.  Oxygen and one reducing equivalent are both required for the conversion of alpha-hydroxyhemin to verdoheme in heme oxygenase.

Authors:  K M Matera; S Takahashi; H Fujii; H Zhou; K Ishikawa; T Yoshimura; D L Rousseau; T Yoshida; M Ikeda-Saito
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

Review 10.  Prostaglandin H synthase: resolved and unresolved mechanistic issues.

Authors:  Ah-Lim Tsai; Richard J Kulmacz
Journal:  Arch Biochem Biophys       Date:  2009-09-01       Impact factor: 4.013

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  14 in total

Review 1.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

2.  Hydrogen sulfide bypasses the rate-limiting oxygen activation of heme oxygenase.

Authors:  Toshitaka Matsui; Ryota Sugiyama; Kenta Sakanashi; Yoko Tamura; Masaki Iida; Yukari Nambu; Tsunehiko Higuchi; Makoto Suematsu; Masao Ikeda-Saito
Journal:  J Biol Chem       Date:  2018-09-20       Impact factor: 5.157

3.  Spectroscopic Evidence for Electronic Control of Heme Hydroxylation by IsdG.

Authors:  Matthew A Conger; Amanda R Cornetta; Matthew D Liptak
Journal:  Inorg Chem       Date:  2019-11-06       Impact factor: 5.165

4.  Reactions of Ferrous Coproheme Decarboxylase (HemQ) with O2 and H2O2 Yield Ferric Heme b.

Authors:  Bennett R Streit; Arianna I Celis; Krista Shisler; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2016-12-16       Impact factor: 3.162

5.  Iron Acquisition in Mycobacterium tuberculosis.

Authors:  Alex Chao; Paul J Sieminski; Cedric P Owens; Celia W Goulding
Journal:  Chem Rev       Date:  2018-11-26       Impact factor: 60.622

6.  Heme-FeIII Superoxide, Peroxide and Hydroperoxide Thermodynamic Relationships: FeIII-O2•- Complex H-Atom Abstraction Reactivity.

Authors:  Hyun Kim; Patrick J Rogler; Savita K Sharma; Andrew W Schaefer; Edward I Solomon; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2020-01-28       Impact factor: 15.419

7.  Structure of a Mycobacterium tuberculosis Heme-Degrading Protein, MhuD, Variant in Complex with Its Product.

Authors:  Alex Chao; Kalistyn H Burley; Paul J Sieminski; Rodger de Miranda; Xiaorui Chen; David L Mobley; Celia W Goulding
Journal:  Biochemistry       Date:  2019-11-06       Impact factor: 3.162

8.  Reaction intermediates in the heme degradation reaction by HutZ from Vibrio cholerae.

Authors:  Takeshi Uchida; Yukari Sekine; Nobuhiko Dojun; Ariel Lewis-Ballester; Izumi Ishigami; Toshitaka Matsui; Syun-Ru Yeh; Koichiro Ishimori
Journal:  Dalton Trans       Date:  2017-06-27       Impact factor: 4.390

9.  Heme catabolism in the causative agent of anthrax.

Authors:  Justin Clark; Austen Terwilliger; Chinh Nguyen; Sabrina Green; Chris Nobles; Anthony Maresso
Journal:  Mol Microbiol       Date:  2019-05-27       Impact factor: 3.501

Review 10.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

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