Literature DB >> 15528205

Roles of distal Asp in heme oxygenase from Corynebacterium diphtheriae, HmuO: A water-driven oxygen activation mechanism.

Toshitaka Matsui1, Momoko Furukawa, Masaki Unno, Takeshi Tomita, Masao Ikeda-Saito.   

Abstract

Heme oxygenases found in mammals, plants, and bacteria catalyze degradation of heme using the same mechanism. Roles of distal Asp (Asp-136) residue in HmuO, a heme oxygenase of Corynebacterium diphtheriae, have been investigated by site-directed mutagenesis, enzyme kinetics, resonance Raman spectroscopy, and x-ray crystallography. Replacements of the Asp-136 by Ala and Phe resulted in reduced heme degradation activity due to the formation of ferryl heme, showing that the distal Asp is critical in HmuO heme oxygenase activity. D136N HmuO catalyzed heme degradation at a similar efficiency to wild type and D136E HmuO, implying that the carboxylate moiety is not required for the heme catabolism by HmuO. Resonance Raman results suggest that the inactive ferryl heme formation in the HmuO mutants is induced by disruption of the interaction between a reactive Fe-OOH species and an adjacent distal pocket water molecule. Crystal structural analysis of the HmuO mutants confirms partial disappearance of this nearby water in D136A HmuO. Our results provide the first experimental evidence for the catalytic importance of the nearby water molecule that can be universally critical in heme oxygenase catalysis and propose that the distal Asp helps in positioning the key water molecule at a position suitable for efficient activation of the Fe-OOH species.

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Year:  2004        PMID: 15528205     DOI: 10.1074/jbc.M410263200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  20 in total

1.  Spectroscopic insights into axial ligation and active-site H-bonding in substrate-bound human heme oxygenase-2.

Authors:  Jessica D Gardner; Li Yi; Stephen W Ragsdale; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2010-05-26       Impact factor: 3.358

2.  Tyrosine oxidation in heme oxygenase: examination of long-range proton-coupled electron transfer.

Authors:  Valeriy V Smirnov; Justine P Roth
Journal:  J Biol Inorg Chem       Date:  2014-07-15       Impact factor: 3.358

3.  Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI.

Authors:  Shin-ichi J Takayama; Georgia Ukpabi; Michael E P Murphy; A Grant Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-25       Impact factor: 11.205

4.  Hydrogen sulfide bypasses the rate-limiting oxygen activation of heme oxygenase.

Authors:  Toshitaka Matsui; Ryota Sugiyama; Kenta Sakanashi; Yoko Tamura; Masaki Iida; Yukari Nambu; Tsunehiko Higuchi; Makoto Suematsu; Masao Ikeda-Saito
Journal:  J Biol Chem       Date:  2018-09-20       Impact factor: 5.157

5.  The Asp99-Arg188 salt bridge of the Pseudomonas aeruginosa HemO is critical in allowing conformational flexibility during catalysis.

Authors:  Geoffrey A Heinzl; Weiliang Huang; Elizabeth Robinson; Fengtian Xue; Pierre Moëne-Loccoz; Angela Wilks
Journal:  J Biol Inorg Chem       Date:  2018-09-08       Impact factor: 3.358

6.  The IsdG-family of haem oxygenases degrades haem to a novel chromophore.

Authors:  Michelle L Reniere; Georgia N Ukpabi; S Reese Harry; Donald F Stec; Robert Krull; David W Wright; Brian O Bachmann; Michael E Murphy; Eric P Skaar
Journal:  Mol Microbiol       Date:  2010-02-17       Impact factor: 3.501

7.  Solution 1H NMR characterization of substrate-free C. diphtheriae heme oxygenase: pertinence for determining magnetic axes in paramagnetic substrate complexes.

Authors:  Zhenming Du; Masaki Unno; Toshitaka Matsui; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2010-07-01       Impact factor: 4.155

8.  Automated protein motif generation in the structure-based protein function prediction tool ProMOL.

Authors:  Mikhail Osipovitch; Mitchell Lambrecht; Cameron Baker; Shariq Madha; Jeffrey L Mills; Paul A Craig; Herbert J Bernstein
Journal:  J Struct Funct Genomics       Date:  2015-11-16

9.  Role of propionates in substrate binding to heme oxygenase from Neisseria meningitidis: a nuclear magnetic resonance study.

Authors:  Dungeng Peng; Li-Hua Ma; Kevin M Smith; Xuhong Zhang; Michihiko Sato; Gerd N La Mar
Journal:  Biochemistry       Date:  2012-08-30       Impact factor: 3.162

10.  Coupling of the distal hydrogen bond network to the exogenous ligand in substrate-bound, resting state human heme oxygenase.

Authors:  Dungeng Peng; Hiroshi Ogura; Wenfeng Zhu; Li-Hua Ma; John P Evans; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

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