Literature DB >> 27003292

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy.

Matthias Christoph Munder1, Daniel Midtvedt2, Titus Franzmann1, Elisabeth Nüske1, Oliver Otto3, Maik Herbig3, Elke Ulbricht3, Paul Müller3, Anna Taubenberger3, Shovamayee Maharana1, Liliana Malinovska1, Doris Richter1, Jochen Guck3, Vasily Zaburdaev2, Simon Alberti1.   

Abstract

Cells can enter into a dormant state when faced with unfavorable conditions. However, how cells enter into and recover from this state is still poorly understood. Here, we study dormancy in different eukaryotic organisms and find it to be associated with a significant decrease in the mobility of organelles and foreign tracer particles. We show that this reduced mobility is caused by an influx of protons and a marked acidification of the cytoplasm, which leads to widespread macromolecular assembly of proteins and triggers a transition of the cytoplasm to a solid-like state with increased mechanical stability. We further demonstrate that this transition is required for cellular survival under conditions of starvation. Our findings have broad implications for understanding alternative physiological states, such as quiescence and dormancy, and create a new view of the cytoplasm as an adaptable fluid that can reversibly transition into a protective solid-like state.

Entities:  

Keywords:  <i>s. cerevisiae</i>; <i>s. pombe</i>; biophysics; cell biology; cytosolic pH; dictyostelium; dormancy; macromolecular assembly; metabolism; phase transition; starvation; structural biology

Mesh:

Year:  2016        PMID: 27003292      PMCID: PMC4850707          DOI: 10.7554/eLife.09347

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  84 in total

1.  Osmotically unresponsive water fraction on proteins: non-ideal osmotic pressure of bovine serum albumin as a function of pH and salt concentration.

Authors:  Gary D Fullerton; Kalpana M Kanal; Ivan L Cameron
Journal:  Cell Biol Int       Date:  2005-12-22       Impact factor: 3.612

2.  Lack of appreciation of the role of osmotically unresponsive water in cell volume regulation.

Authors:  Ivan L Cameron; Gary D Fullerton
Journal:  Cell Biol Int       Date:  2014-01-30       Impact factor: 3.612

Review 3.  Kinesin superfamily motor proteins and intracellular transport.

Authors:  Nobutaka Hirokawa; Yasuko Noda; Yosuke Tanaka; Shinsuke Niwa
Journal:  Nat Rev Mol Cell Biol       Date:  2009-10       Impact factor: 94.444

Review 4.  Connecting the dots: the effects of macromolecular crowding on cell physiology.

Authors:  Márcio A Mourão; Joe B Hakim; Santiago Schnell
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

5.  Energy requirements for maltose transport in yeast.

Authors:  R Serrano
Journal:  Eur J Biochem       Date:  1977-10-17

6.  Proliferation/Quiescence: When to start? Where to stop? What to stock?

Authors:  Bertrand Daignan-Fornier; Isabelle Sagot
Journal:  Cell Div       Date:  2011-12-09       Impact factor: 5.130

7.  Intracellular pH distribution in Saccharomyces cerevisiae cell populations, analyzed by flow cytometry.

Authors:  Minoska Valli; Michael Sauer; Paola Branduardi; Nicole Borth; Danilo Porro; Diethard Mattanovich
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

8.  Intracellular pH Regulates Transitions Between Dormancy and Development of Brine Shrimp (Artemia salina) Embryos.

Authors:  W B Busa; J H Crowe
Journal:  Science       Date:  1983-07-22       Impact factor: 47.728

9.  Transcriptional transitions during Dictyostelium spore germination.

Authors:  Qikai Xu; Miroslava Ibarra; Dana Mahadeo; Chad Shaw; Eryong Huang; Adam Kuspa; David Cotter; Gad Shaulsky
Journal:  Eukaryot Cell       Date:  2004-10

10.  Measurement of yeast intracellular pH by image processing and the change it undergoes during growth phase.

Authors:  T Imai; T Ohno
Journal:  J Biotechnol       Date:  1995-01-15       Impact factor: 3.307

View more
  118 in total

1.  Defining the RNA interactome by total RNA-associated protein purification.

Authors:  Vadim Shchepachev; Stefan Bresson; Christos Spanos; Elisabeth Petfalski; Lutz Fischer; Juri Rappsilber; David Tollervey
Journal:  Mol Syst Biol       Date:  2019-04-08       Impact factor: 11.429

2.  Phosphorylation-Mediated Clearance of Amyloid-like Assemblies in Meiosis.

Authors:  Kayla Carpenter; Rachel Brietta Bell; Julius Yunus; Angelika Amon; Luke Edwin Berchowitz
Journal:  Dev Cell       Date:  2018-05-07       Impact factor: 12.270

Review 3.  Cellular sensing by phase separation: Using the process, not just the products.

Authors:  Haneul Yoo; Catherine Triandafillou; D Allan Drummond
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

Review 4.  RNA contributions to the form and function of biomolecular condensates.

Authors:  Christine Roden; Amy S Gladfelter
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-06       Impact factor: 94.444

Review 5.  Microorganisms maintain crowding homeostasis.

Authors:  Jonas van den Berg; Arnold J Boersma; Bert Poolman
Journal:  Nat Rev Microbiol       Date:  2017-03-27       Impact factor: 60.633

6.  Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding.

Authors:  Boqun Liu; Christoffer Åberg; Floris J van Eerden; Siewert J Marrink; Bert Poolman; Arnold J Boersma
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

7.  Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Authors:  Shahar Sukenik; Pin Ren; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

8.  Cytoplasmic RNA-Protein Particles Exhibit Non-Gaussian Subdiffusive Behavior.

Authors:  Thomas J Lampo; Stella Stylianidou; Mikael P Backlund; Paul A Wiggins; Andrew J Spakowitz
Journal:  Biophys J       Date:  2017-01-11       Impact factor: 4.033

Review 9.  Cellular quiescence in budding yeast.

Authors:  Siyu Sun; David Gresham
Journal:  Yeast       Date:  2021-01-25       Impact factor: 3.239

10.  Effects of subtenon-injected autologous platelet-rich plasma on visual functions in eyes with retinitis pigmentosa: preliminary clinical results.

Authors:  Umut Arslan; Emin Özmert; Sibel Demirel; Firdevs Örnek; Figen Şermet
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2018-03-15       Impact factor: 3.117

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.