Literature DB >> 27001860

Photochemical reaction cycle transitions during anion channelrhodopsin gating.

Oleg A Sineshchekov1, Hai Li1, Elena G Govorunova1, John L Spudich2.   

Abstract

A recently discovered family of natural anion channelrhodopsins (ACRs) have the highest conductance among channelrhodopsins and exhibit exclusive anion selectivity, which make them efficient inhibitory tools for optogenetics. We report analysis of flash-induced absorption changes in purified wild-type and mutant ACRs, and of photocurrents they generate in HEK293 cells. Contrary to cation channelrhodopsins (CCRs), the ion conducting state of ACRs develops in an L-like intermediate that precedes the deprotonation of the retinylidene Schiff base (i.e., formation of an M intermediate). Channel closing involves two mechanisms leading to depletion of the conducting L-like state: (i) Fast closing is caused by a reversible L⇔M conversion. Glu-68 in Guillardia theta ACR1 plays an important role in this transition, likely serving as a counterion and proton acceptor at least at high and neutral pH. Incomplete suppression of M formation in the GtACR1_E68Q mutant indicates the existence of an alternative proton acceptor. (ii) Slow closing of the channel parallels irreversible depletion of the M-like and, hence, L-like state. Mutation of Cys-102 that strongly affected slow channel closing slowed the photocycle to the same extent. The L and M intermediates were in equilibrium in C102A as in the WT. In the position of Glu-123 in channelrhodopsin-2, ACRs contain a noncarboxylate residue, the mutation of which to Glu produced early Schiff base proton transfer and strongly inhibited channel activity. The data reveal fundamental differences between natural ACR and CCR conductance mechanisms and their underlying photochemistry, further confirming that these proteins form distinct families of rhodopsin channels.

Entities:  

Keywords:  Schiff base; channel gating; channelrhodopsins; optogenetics; photochemical conversions

Mesh:

Substances:

Year:  2016        PMID: 27001860      PMCID: PMC4833267          DOI: 10.1073/pnas.1525269113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Proton transfers in the photochemical reaction cycle of proteorhodopsin.

Authors:  Andrei K Dioumaev; Leonid S Brown; Jennifer Shih; Elena N Spudich; John L Spudich; Janos K Lanyi
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

2.  Light-induced intramolecular charge movements in microbial rhodopsins in intact E. coli cells.

Authors:  Oleg A Sineshchekov; John L Spudich
Journal:  Photochem Photobiol Sci       Date:  2004-03-18       Impact factor: 3.982

3.  Gating mechanisms of a natural anion channelrhodopsin.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

4.  PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions.

Authors:  Mats H M Olsson; Chresten R Søndergaard; Michal Rostkowski; Jan H Jensen
Journal:  J Chem Theory Comput       Date:  2011-01-06       Impact factor: 6.006

5.  Evaluation of intrinsic chemical kinetics and transient product spectra from time-resolved spectroscopic data.

Authors:  A K Dioumaev
Journal:  Biophys Chem       Date:  1997-09-01       Impact factor: 2.352

6.  Intramolecular proton transfer in channelrhodopsins.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Jihong Wang; Hai Li; John L Spudich
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

7.  Conversion of channelrhodopsin into a light-gated chloride channel.

Authors:  Jonas Wietek; J Simon Wiegert; Nona Adeishvili; Franziska Schneider; Hiroshi Watanabe; Satoshi P Tsunoda; Arend Vogt; Marcus Elstner; Thomas G Oertner; Peter Hegemann
Journal:  Science       Date:  2014-03-27       Impact factor: 47.728

8.  Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle.

Authors:  L S Brown; L Bonet; R Needleman; J K Lanyi
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

9.  Proteomonas sulcata ACR1: A Fast Anion Channelrhodopsin.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; John L Spudich
Journal:  Photochem Photobiol       Date:  2016-02-01       Impact factor: 3.421

10.  Attractant and repellent signaling conformers of sensory rhodopsin-transducer complexes.

Authors:  Oleg A Sineshchekov; Jun Sasaki; Jihong Wang; John L Spudich
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

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  26 in total

1.  Application of Optogenetics for Muscle Cells and Stem Cells.

Authors:  Toshifumi Asano; Daniel Boon Loong Teh; Hiromu Yawo
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  Complex Photochemistry within the Green-Absorbing Channelrhodopsin ReaChR.

Authors:  Benjamin S Krause; Christiane Grimm; Joel C D Kaufmann; Franziska Schneider; Thomas P Sakmar; Franz J Bartl; Peter Hegemann
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

3.  In Vitro Activity of a Purified Natural Anion Channelrhodopsin.

Authors:  Hai Li; Oleg A Sineshchekov; Gang Wu; John L Spudich
Journal:  J Biol Chem       Date:  2016-10-27       Impact factor: 5.157

4.  Opposite Charge Movements Within the Photoactive Site Modulate Two-Step Channel Closing in GtACR1.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; Xin Wang; John L Spudich
Journal:  Biophys J       Date:  2019-10-14       Impact factor: 4.033

5.  Structurally Distinct Cation Channelrhodopsins from Cryptophyte Algae.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; John L Spudich
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

6.  Structural Changes in an Anion Channelrhodopsin: Formation of the K and L Intermediates at 80 K.

Authors:  Adrian Yi; Hai Li; Natalia Mamaeva; Roberto E Fernandez De Cordoba; Johan Lugtenburg; Willem J DeGrip; John L Spudich; Kenneth J Rothschild
Journal:  Biochemistry       Date:  2017-04-10       Impact factor: 3.162

Review 7.  Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; John L Spudich
Journal:  Annu Rev Biochem       Date:  2017-03-09       Impact factor: 23.643

8.  Resonance Raman Study of an Anion Channelrhodopsin: Effects of Mutations near the Retinylidene Schiff Base.

Authors:  Adrian Yi; Natalia Mamaeva; Hai Li; John L Spudich; Kenneth J Rothschild
Journal:  Biochemistry       Date:  2016-04-14       Impact factor: 3.162

9.  Bacteriorhodopsin-like channelrhodopsins: Alternative mechanism for control of cation conductance.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-25       Impact factor: 11.205

10.  Structural mechanisms of selectivity and gating in anion channelrhodopsins.

Authors:  Hideaki E Kato; Yoon Seok Kim; Joseph M Paggi; Kathryn E Evans; William E Allen; Claire Richardson; Keiichi Inoue; Shota Ito; Charu Ramakrishnan; Lief E Fenno; Keitaro Yamashita; Daniel Hilger; Soo Yeun Lee; Andre Berndt; Kang Shen; Hideki Kandori; Ron O Dror; Brian K Kobilka; Karl Deisseroth
Journal:  Nature       Date:  2018-08-29       Impact factor: 49.962

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