Literature DB >> 29078348

Bacteriorhodopsin-like channelrhodopsins: Alternative mechanism for control of cation conductance.

Oleg A Sineshchekov1, Elena G Govorunova1, Hai Li1, John L Spudich2.   

Abstract

The recently discovered cation-conducting channelrhodopsins in cryptophyte algae are far more homologous to haloarchaeal rhodopsins, in particular the proton pump bacteriorhodopsin (BR), than to earlier known channelrhodopsins. They uniquely retain the two carboxylate residues that define the vectorial proton path in BR in which Asp-85 and Asp-96 serve as acceptor and donor, respectively, of the photoactive site Schiff base (SB) proton. Here we analyze laser flash-induced photocurrents and photochemical conversions in Guillardia theta cation channelrhodopsin 2 (GtCCR2) and its mutants. Our results reveal a model in which the GtCCR2 retinylidene SB chromophore rapidly deprotonates to the Asp-85 homolog, as in BR. Opening of the cytoplasmic channel to cations in GtCCR2 requires the Asp-96 homolog to be unprotonated, as has been proposed for the BR cytoplasmic channel for protons. However, reprotonation of the GtCCR2 SB occurs not from the Asp-96 homolog, but by proton return from the earlier protonated acceptor, preventing vectorial proton translocation across the membrane. In GtCCR2, deprotonation of the Asp-96 homolog is required for cation channel opening and occurs >10-fold faster than reprotonation of the SB, which temporally correlates with channel closing. Hence in GtCCR2, cation channel gating is tightly coupled to intramolecular proton transfers involving the same residues that define the vectorial proton path in BR. Published under the PNAS license.

Entities:  

Keywords:  channelrhodopsins; ion transport; optogenetics; photocycle; proton transfers

Mesh:

Substances:

Year:  2017        PMID: 29078348      PMCID: PMC5692563          DOI: 10.1073/pnas.1710702114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

Review 1.  Reconciling crystallography and mutagenesis: a synthetic approach to the creation of a comprehensive model for proton pumping by bacteriorhodopsin.

Authors:  L S Brown
Journal:  Biochim Biophys Acta       Date:  2000-08-30

2.  Evaluation of intrinsic chemical kinetics and transient product spectra from time-resolved spectroscopic data.

Authors:  A K Dioumaev
Journal:  Biophys Chem       Date:  1997-09-01       Impact factor: 2.352

Review 3.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

4.  Proton transfer via a transient linear water-molecule chain in a membrane protein.

Authors:  Erik Freier; Steffen Wolf; Klaus Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-27       Impact factor: 11.205

5.  Optogenetic inhibition of behavior with anion channelrhodopsins.

Authors:  Farhan Mohammad; James C Stewart; Stanislav Ott; Katarina Chlebikova; Jia Yi Chua; Tong-Wey Koh; Joses Ho; Adam Claridge-Chang
Journal:  Nat Methods       Date:  2017-01-23       Impact factor: 28.547

6.  Intramolecular proton transfer in channelrhodopsins.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Jihong Wang; Hai Li; John L Spudich
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

7.  Relocation of water molecules between the Schiff base and the Thr46-Asp96 region during light-driven unidirectional proton transport by bacteriorhodopsin: an FTIR study of the N intermediate.

Authors:  Akio Maeda; Robert B Gennis; Sergei P Balashov; Thomas G Ebrey
Journal:  Biochemistry       Date:  2005-04-26       Impact factor: 3.162

8.  JPCalc, a software package for calculating liquid junction potential corrections in patch-clamp, intracellular, epithelial and bilayer measurements and for correcting junction potential measurements.

Authors:  P H Barry
Journal:  J Neurosci Methods       Date:  1994-01       Impact factor: 2.390

Review 9.  Atomic resolution structures of bacteriorhodopsin photocycle intermediates: the role of discrete water molecules in the function of this light-driven ion pump.

Authors:  H Luecke
Journal:  Biochim Biophys Acta       Date:  2000-08-30

10.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

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  13 in total

Review 1.  Novel optogenetics tool: Gt_CCR4, a light-gated cation channel with high reactivity to weak light.

Authors:  Shoko Hososhima; Shunta Shigemura; Hideki Kandori; Satoshi P Tsunoda
Journal:  Biophys Rev       Date:  2020-03-12

2.  Rhodopsin-Based Optogenetics: Basics and Applications.

Authors:  Alexey Alekseev; Valentin Gordeliy; Ernst Bamberg
Journal:  Methods Mol Biol       Date:  2022

3.  Kalium channelrhodopsins are natural light-gated potassium channels that mediate optogenetic inhibition.

Authors:  Elena G Govorunova; Yueyang Gou; Oleg A Sineshchekov; Hai Li; Xiaoyu Lu; Yumei Wang; Leonid S Brown; François St-Pierre; Mingshan Xue; John L Spudich
Journal:  Nat Neurosci       Date:  2022-06-20       Impact factor: 28.771

4.  RubyACRs, nonalgal anion channelrhodopsins with highly red-shifted absorption.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; Yumei Wang; Leonid S Brown; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-01       Impact factor: 11.205

5.  Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.

Authors:  Koichiro E Kishi; Yoon Seok Kim; Masahiro Fukuda; Masatoshi Inoue; Tsukasa Kusakizako; Peter Y Wang; Charu Ramakrishnan; Eamon F X Byrne; Elina Thadhani; Joseph M Paggi; Toshiki E Matsui; Keitaro Yamashita; Takashi Nagata; Masae Konno; Sean Quirin; Maisie Lo; Tyler Benster; Tomoko Uemura; Kehong Liu; Mikihiro Shibata; Norimichi Nomura; So Iwata; Osamu Nureki; Ron O Dror; Keiichi Inoue; Karl Deisseroth; Hideaki E Kato
Journal:  Cell       Date:  2022-02-02       Impact factor: 66.850

6.  MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins.

Authors:  Johannes Oppermann; Paul Fischer; Arita Silapetere; Bernhard Liepe; Silvia Rodriguez-Rozada; José Flores-Uribe; Enrico Peter; Anke Keidel; Johannes Vierock; Joel Kaufmann; Matthias Broser; Meike Luck; Franz Bartl; Peter Hildebrandt; J Simon Wiegert; Oded Béjà; Peter Hegemann; Jonas Wietek
Journal:  Nat Commun       Date:  2019-07-25       Impact factor: 14.919

7.  Conductance Mechanisms of Rapidly Desensitizing Cation Channelrhodopsins from Cryptophyte Algae.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; Yumei Wang; Michael Melkonian; Gane K-S Wong; Leonid S Brown; John L Spudich
Journal:  mBio       Date:  2020-04-21       Impact factor: 7.867

Review 8.  Towards the Idea of Molecular Brains.

Authors:  Youri Timsit; Sergeant-Perthuis Grégoire
Journal:  Int J Mol Sci       Date:  2021-11-01       Impact factor: 5.923

Review 9.  Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective.

Authors:  Youri Timsit; Magali Lescot; Martha Valiadi; Fabrice Not
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

10.  Viral rhodopsins 1 are an unique family of light-gated cation channels.

Authors:  Dmitrii Zabelskii; Alexey Alekseev; Kirill Kovalev; Vladan Rankovic; Taras Balandin; Dmytro Soloviov; Dmitry Bratanov; Ekaterina Savelyeva; Elizaveta Podolyak; Dmytro Volkov; Svetlana Vaganova; Roman Astashkin; Igor Chizhov; Natalia Yutin; Maksim Rulev; Alexander Popov; Ana-Sofia Eria-Oliveira; Tatiana Rokitskaya; Thomas Mager; Yuri Antonenko; Riccardo Rosselli; Grigoriy Armeev; Konstantin Shaitan; Michel Vivaudou; Georg Büldt; Andrey Rogachev; Francisco Rodriguez-Valera; Mikhail Kirpichnikov; Tobias Moser; Andreas Offenhäusser; Dieter Willbold; Eugene Koonin; Ernst Bamberg; Valentin Gordeliy
Journal:  Nat Commun       Date:  2020-11-11       Impact factor: 14.919

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