Literature DB >> 30158697

Structural mechanisms of selectivity and gating in anion channelrhodopsins.

Hideaki E Kato1,2, Yoon Seok Kim3,4,5, Joseph M Paggi6,7, Kathryn E Evans3,4,5, William E Allen3,4,5, Claire Richardson6, Keiichi Inoue8,9,10, Shota Ito9, Charu Ramakrishnan3,4,5, Lief E Fenno3,4,5, Keitaro Yamashita11, Daniel Hilger12, Soo Yeun Lee3,4,5, Andre Berndt3,4,5, Kang Shen13,5, Hideki Kandori9,10, Ron O Dror6,7, Brian K Kobilka12, Karl Deisseroth14,15,16.   

Abstract

Both designed and natural anion-conducting channelrhodopsins (dACRs and nACRs, respectively) have been widely applied in optogenetics (enabling selective inhibition of target-cell activity during animal behaviour studies), but each class exhibits performance limitations, underscoring trade-offs in channel structure-function relationships. Therefore, molecular and structural insights into dACRs and nACRs will be critical not only for understanding the fundamental mechanisms of these light-gated anion channels, but also to create next-generation optogenetic tools. Here we report crystal structures of the dACR iC++, along with spectroscopic, electrophysiological and computational analyses that provide unexpected insights into pH dependence, substrate recognition, channel gating and ion selectivity of both dACRs and nACRs. These results enabled us to create an anion-conducting channelrhodopsin integrating the key features of large photocurrent and fast kinetics alongside exclusive anion selectivity.

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Year:  2018        PMID: 30158697      PMCID: PMC6317992          DOI: 10.1038/s41586-018-0504-5

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  45 in total

1.  PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data.

Authors:  Daniel R Roe; Thomas E Cheatham
Journal:  J Chem Theory Comput       Date:  2013-06-25       Impact factor: 6.006

2.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

3.  Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald.

Authors:  Romelia Salomon-Ferrer; Andreas W Götz; Duncan Poole; Scott Le Grand; Ross C Walker
Journal:  J Chem Theory Comput       Date:  2013-08-20       Impact factor: 6.006

4.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

5.  Atomistic Study of Intramolecular Interactions in the Closed-State Channelrhodopsin Chimera, C1C2.

Authors:  Monika R VanGordon; Gaurav Gyawali; Steven W Rick; Susan B Rempe
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

6.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Retinal conformation governs pKa of protonated Schiff base in rhodopsin activation.

Authors:  Shengshuang Zhu; Michael F Brown; Scott E Feller
Journal:  J Am Chem Soc       Date:  2013-06-11       Impact factor: 15.419

8.  Revised AMBER parameters for bioorganic phosphates.

Authors:  T Steinbrecher; J Latzer; D A Case
Journal:  J Chem Theory Comput       Date:  2012-09-12       Impact factor: 6.006

9.  Photochemical reaction cycle transitions during anion channelrhodopsin gating.

Authors:  Oleg A Sineshchekov; Hai Li; Elena G Govorunova; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-21       Impact factor: 11.205

Review 10.  The form and function of channelrhodopsin.

Authors:  Karl Deisseroth; Peter Hegemann
Journal:  Science       Date:  2017-09-15       Impact factor: 47.728

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  26 in total

1.  History and Perspectives of Ion-Transporting Rhodopsins.

Authors:  Hideki Kandori
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  Structure-Function Relationship of Channelrhodopsins.

Authors:  Hideaki E Kato
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 3.  Structural Variability in the RLR-MAVS Pathway and Sensitive Detection of Viral RNAs.

Authors:  Qiu-Xing Jiang
Journal:  Med Chem       Date:  2019       Impact factor: 2.745

Review 4.  Molecular Dynamics Simulation for All.

Authors:  Scott A Hollingsworth; Ron O Dror
Journal:  Neuron       Date:  2018-09-19       Impact factor: 17.173

Review 5.  Recent advances in bioelectronics chemistry.

Authors:  Yin Fang; Lingyuan Meng; Aleksander Prominski; Erik N Schaumann; Matthew Seebald; Bozhi Tian
Journal:  Chem Soc Rev       Date:  2020-07-16       Impact factor: 54.564

6.  Nano-enabled cellular engineering for bioelectric studies.

Authors:  Jiuyun Shi; Clementene Clayton; Bozhi Tian
Journal:  Nano Res       Date:  2019-12-21       Impact factor: 8.897

Review 7.  Biophysics of rhodopsins and optogenetics.

Authors:  Hideki Kandori
Journal:  Biophys Rev       Date:  2020-02-17

Review 8.  New era of optogenetics: from the central to peripheral nervous system.

Authors:  Xiang Xu; Thomas Mee; Xiaofeng Jia
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-02-18       Impact factor: 8.250

9.  Opposite Charge Movements Within the Photoactive Site Modulate Two-Step Channel Closing in GtACR1.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; Xin Wang; John L Spudich
Journal:  Biophys J       Date:  2019-10-14       Impact factor: 4.033

Review 10.  Ion channel engineering for modulation and de novo generation of electrical excitability.

Authors:  Hung X Nguyen; Nenad Bursac
Journal:  Curr Opin Biotechnol       Date:  2019-02-16       Impact factor: 9.740

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