Literature DB >> 26976568

Recombinant thiopeptides containing noncanonical amino acids.

Xiaozhou Luo1, Claudio Zambaldo1, Tao Liu2, Yuhan Zhang3, Weimin Xuan1, Chen Wang3, Sean A Reed1, Peng-Yu Yang1, Rongsheng E Wang3, Tsotne Javahishvili3, Peter G Schultz4, Travis S Young5.   

Abstract

Thiopeptides are a subclass of ribosomally synthesized and posttranslationally modified peptides (RiPPs) with complex molecular architectures and an array of biological activities, including potent antimicrobial activity. Here we report the generation of thiopeptides containing noncanonical amino acids (ncAAs) by introducing orthogonal amber suppressor aminoacyl-tRNA synthetase/tRNA pairs into a thiocillin producer strain of Bacillus cereus .We demonstrate that thiopeptide variants containing ncAAs with bioorthogonal chemical reactivity can be further postbiosynthetically modified with biophysical probes, including fluorophores and photo-cross-linkers. This work allows the site-specific incorporation of ncAAs into thiopeptides to increase their structural diversity and probe their biological activity; similar approaches can likely be applied to other classes of RiPPs.

Entities:  

Keywords:  antibiotic; biosynthesis; natural products; noncanonical amino acid; thiopeptides

Mesh:

Substances:

Year:  2016        PMID: 26976568      PMCID: PMC4822594          DOI: 10.1073/pnas.1602733113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Manipulation of thiocillin variants by prepeptide gene replacement: structure, conformation, and activity of heterocycle substitution mutants.

Authors:  Albert A Bowers; Michael G Acker; Alexander Koglin; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

Review 2.  Thiopeptide antibiotics.

Authors:  Mark C Bagley; James W Dale; Eleanor A Merritt; Xin Xiong
Journal:  Chem Rev       Date:  2005-02       Impact factor: 60.622

3.  The transcription factor FOXM1 is a cellular target of the natural product thiostrepton.

Authors:  Nagaratna S Hegde; Deborah A Sanders; Raphaël Rodriguez; Shankar Balasubramanian
Journal:  Nat Chem       Date:  2011-08-21       Impact factor: 24.427

Review 4.  Thiazolyl peptide antibiotic biosynthesis: a cascade of post-translational modifications on ribosomal nascent proteins.

Authors:  Christopher T Walsh; Michael G Acker; Albert A Bowers
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

5.  Three ring posttranslational circuses: insertion of oxazoles, thiazoles, and pyridines into protein-derived frameworks.

Authors:  Christopher T Walsh; Steven J Malcolmson; Travis S Young
Journal:  ACS Chem Biol       Date:  2012-01-17       Impact factor: 5.100

6.  Ribosomal route to small-molecule diversity.

Authors:  Ma Diarey B Tianero; Mohamed S Donia; Travis S Young; Peter G Schultz; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2011-12-22       Impact factor: 15.419

7.  Evolution of cyclic peptide protease inhibitors.

Authors:  Travis S Young; Douglas D Young; Insha Ahmad; John M Louis; Stephen J Benkovic; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

8.  Radical-mediated enzymatic carbon chain fragmentation-recombination.

Authors:  Qi Zhang; Yuxue Li; Dandan Chen; Yi Yu; Lian Duan; Ben Shen; Wen Liu
Journal:  Nat Chem Biol       Date:  2011-01-16       Impact factor: 15.040

9.  Total synthesis and complete structural assignment of thiocillin I.

Authors:  Virender S Aulakh; Marco A Ciufolini
Journal:  J Am Chem Soc       Date:  2011-03-29       Impact factor: 15.419

10.  Production of lantipeptides in Escherichia coli.

Authors:  Yanxiang Shi; Xiao Yang; Neha Garg; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2010-11-29       Impact factor: 15.419

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  21 in total

Review 1.  Elucidating and engineering thiopeptide biosynthesis.

Authors:  Philip R Bennallack; Joel S Griffitts
Journal:  World J Microbiol Biotechnol       Date:  2017-05-11       Impact factor: 3.312

Review 2.  At the Interface of Chemical and Biological Synthesis: An Expanded Genetic Code.

Authors:  Han Xiao; Peter G Schultz
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

3.  Incorporation of Nonproteinogenic Amino Acids in Class I and II Lantibiotics.

Authors:  Nidhi Kakkar; Jessica G Perez; Wenshe R Liu; Michael C Jewett; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2018-02-21       Impact factor: 5.100

Review 4.  Thiopeptides: antibiotics with unique chemical structures and diverse biological activities.

Authors:  Derek C K Chan; Lori L Burrows
Journal:  J Antibiot (Tokyo)       Date:  2020-12-21       Impact factor: 2.649

5.  Evolving the N-Terminal Domain of Pyrrolysyl-tRNA Synthetase for Improved Incorporation of Noncanonical Amino Acids.

Authors:  Vangmayee Sharma; Yu Zeng; W Wesley Wang; Yuchen Qiao; Yadagiri Kurra; Wenshe R Liu
Journal:  Chembiochem       Date:  2017-11-16       Impact factor: 3.164

6.  Interception of the Bycroft-Gowland Intermediate in the Enzymatic Macrocyclization of Thiopeptides.

Authors:  Jonathan W Bogart; Nicholas J Kramer; Aneta Turlik; Rachel M Bleich; Daniel S Catlin; Frank C Schroeder; Satish K Nair; R Thomas Williamson; K N Houk; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2020-07-16       Impact factor: 15.419

7.  Protein Crosslinking by Genetically Encoded Noncanonical Amino Acids with Reactive Aryl Carbamate Side Chains.

Authors:  Weimin Xuan; Sida Shao; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2017-04-03       Impact factor: 15.336

8.  Structure-Activity Relationship and Molecular Mechanics Reveal the Importance of Ring Entropy in the Biosynthesis and Activity of a Natural Product.

Authors:  Hai L Tran; Katrina W Lexa; Olivier Julien; Travis S Young; Christopher T Walsh; Matthew P Jacobson; James A Wells
Journal:  J Am Chem Soc       Date:  2017-02-13       Impact factor: 15.419

9.  Substrate Recognition by the Class II Lanthipeptide Synthetase HalM2.

Authors:  Imran R Rahman; Jeella Z Acedo; Xiaoran Roger Liu; Lingyang Zhu; Justine Arrington; Michael L Gross; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2020-04-28       Impact factor: 5.100

Review 10.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

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