Literature DB >> 26972587

Epigenetic modulators, modifiers and mediators in cancer aetiology and progression.

Andrew P Feinberg1, Michael A Koldobskiy1, Anita Göndör2.   

Abstract

This year is the tenth anniversary of the publication in this journal of a model suggesting the existence of 'tumour progenitor genes'. These genes are epigenetically disrupted at the earliest stages of malignancies, even before mutations, and thus cause altered differentiation throughout tumour evolution. The past decade of discovery in cancer epigenetics has revealed a number of similarities between cancer genes and stem cell reprogramming genes, widespread mutations in epigenetic regulators, and the part played by chromatin structure in cellular plasticity in both development and cancer. In the light of these discoveries, we suggest here a framework for cancer epigenetics involving three types of genes: 'epigenetic mediators', corresponding to the tumour progenitor genes suggested earlier; 'epigenetic modifiers' of the mediators, which are frequently mutated in cancer; and 'epigenetic modulators' upstream of the modifiers, which are responsive to changes in the cellular environment and often linked to the nuclear architecture. We suggest that this classification is helpful in framing new diagnostic and therapeutic approaches to cancer.

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Year:  2016        PMID: 26972587      PMCID: PMC4888057          DOI: 10.1038/nrg.2016.13

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  274 in total

1.  Genetic variation in insulin pathway genes and distal colorectal adenoma risk.

Authors:  A Joan Levine; Ugonna Ihenacho; Won Lee; Jane C Figueiredo; David J Vandenberg; Christopher K Edlund; Brian D Davis; Mariana C Stern; Robert W Haile
Journal:  Int J Colorectal Dis       Date:  2012-05-30       Impact factor: 2.571

2.  An emerin "proteome": purification of distinct emerin-containing complexes from HeLa cells suggests molecular basis for diverse roles including gene regulation, mRNA splicing, signaling, mechanosensing, and nuclear architecture.

Authors:  James M Holaska; Katherine L Wilson
Journal:  Biochemistry       Date:  2007-07-10       Impact factor: 3.162

3.  DNMT3A mutations in acute myeloid leukemia.

Authors:  Timothy J Ley; Li Ding; Matthew J Walter; Michael D McLellan; Tamara Lamprecht; David E Larson; Cyriac Kandoth; Jacqueline E Payton; Jack Baty; John Welch; Christopher C Harris; Cheryl F Lichti; R Reid Townsend; Robert S Fulton; David J Dooling; Daniel C Koboldt; Heather Schmidt; Qunyuan Zhang; John R Osborne; Ling Lin; Michelle O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Sean D McGrath; Lucinda A Fulton; Vincent J Magrini; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Joshua J Conyers; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd Wylie; Jason Walker; Joelle Kalicki; Mark A Watson; Sharon Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Peter Westervelt; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Richard K Wilson
Journal:  N Engl J Med       Date:  2010-11-10       Impact factor: 91.245

Review 4.  Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer.

Authors:  Christoph Plass; Stefan M Pfister; Anders M Lindroth; Olga Bogatyrova; Rainer Claus; Peter Lichter
Journal:  Nat Rev Genet       Date:  2013-10-09       Impact factor: 53.242

5.  NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis.

Authors:  Gang G Wang; Ling Cai; Martina P Pasillas; Mark P Kamps
Journal:  Nat Cell Biol       Date:  2007-06-24       Impact factor: 28.824

6.  Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis.

Authors:  Jozef Madzo; Hui Liu; Alexis Rodriguez; Aparna Vasanthakumar; Sriram Sundaravel; Donne Bennett D Caces; Timothy J Looney; Li Zhang; Janet B Lepore; Trisha Macrae; Robert Duszynski; Alan H Shih; Chun-Xiao Song; Miao Yu; Yiting Yu; Robert Grossman; Brigitte Raumann; Amit Verma; Chuan He; Ross L Levine; Don Lavelle; Bruce T Lahn; Amittha Wickrema; Lucy A Godley
Journal:  Cell Rep       Date:  2013-12-27       Impact factor: 9.423

7.  X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription.

Authors:  Eda Yildirim; Ruslan I Sadreyev; Stefan F Pinter; Jeannie T Lee
Journal:  Nat Struct Mol Biol       Date:  2011-12-04       Impact factor: 15.369

8.  TET proteins and the control of cytosine demethylation in cancer.

Authors:  Laurianne Scourzic; Enguerran Mouly; Olivier A Bernard
Journal:  Genome Med       Date:  2015-01-29       Impact factor: 11.117

9.  Mutations in epigenetic regulators including SETD2 are gained during relapse in paediatric acute lymphoblastic leukaemia.

Authors:  Brenton G Mar; Lars B Bullinger; Kathleen M McLean; Peter V Grauman; Marian H Harris; Kristen Stevenson; Donna S Neuberg; Amit U Sinha; Stephen E Sallan; Lewis B Silverman; Andrew L Kung; Luca Lo Nigro; Benjamin L Ebert; Scott A Armstrong
Journal:  Nat Commun       Date:  2014-03-24       Impact factor: 14.919

10.  A KRAS-directed transcriptional silencing pathway that mediates the CpG island methylator phenotype.

Authors:  Ryan W Serra; Minggang Fang; Sung Mi Park; Lloyd Hutchinson; Michael R Green
Journal:  Elife       Date:  2014-03-12       Impact factor: 8.140

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  300 in total

Review 1.  The genetic basis of disease.

Authors:  Maria Jackson; Leah Marks; Gerhard H W May; Joanna B Wilson
Journal:  Essays Biochem       Date:  2018-12-02       Impact factor: 8.000

Review 2.  Epigenetic memory in development and disease: Unraveling the mechanism.

Authors:  Sam Thiagalingam
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2020-01-23       Impact factor: 10.680

Review 3.  The potential of targeting Sin3B and its associated complexes for cancer therapy.

Authors:  David J Cantor; Gregory David
Journal:  Expert Opin Ther Targets       Date:  2017-10-09       Impact factor: 6.902

4.  SMYD5 Controls Heterochromatin and Chromosome Integrity during Embryonic Stem Cell Differentiation.

Authors:  Benjamin L Kidder; Runsheng He; Darawalee Wangsa; Hesed M Padilla-Nash; M Margarida Bernardo; Shijie Sheng; Thomas Ried; Keji Zhao
Journal:  Cancer Res       Date:  2017-09-26       Impact factor: 12.701

5.  Intestinal PPARα Protects Against Colon Carcinogenesis via Regulation of Methyltransferases DNMT1 and PRMT6.

Authors:  Yuhong Luo; Cen Xie; Chad N Brocker; Jie Fan; Xuan Wu; Lijin Feng; Qiong Wang; Jie Zhao; Dasheng Lu; Mayank Tandon; Maggie Cam; Kristopher W Krausz; Weiwei Liu; Frank J Gonzalez
Journal:  Gastroenterology       Date:  2019-05-30       Impact factor: 22.682

Review 6.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

7.  An opportune and unique research to evaluate the public health impact of electronic cigarettes.

Authors:  Ahmad Besaratinia; Stella Tommasi
Journal:  Cancer Causes Control       Date:  2017-08-31       Impact factor: 2.506

8.  Epigenetic restriction of Hippo signaling by MORC2 underlies stemness of hepatocellular carcinoma cells.

Authors:  Tao Wang; Zhong-Yi Qin; Liang-Zhi Wen; Yan Guo; Qin Liu; Zeng-Jie Lei; Wei Pan; Kai-Jun Liu; Xing-Wei Wang; Shu-Jie Lai; Wen-Jing Sun; Yan-Ling Wei; Lei Liu; Ling Guo; Yu-Qin Chen; Jun Wang; Hua-Liang Xiao; Xiu-Wu Bian; Dong-Feng Chen; Bin Wang
Journal:  Cell Death Differ       Date:  2018-03-19       Impact factor: 15.828

9.  Proteomic approaches for cancer epigenetics research.

Authors:  Dylan M Marchione; Benjamin A Garcia; John Wojcik
Journal:  Expert Rev Proteomics       Date:  2018-11-27       Impact factor: 3.940

Review 10.  Recent Advances in the Etiopathogenesis of Inflammatory Bowel Disease: The Role of Omics.

Authors:  Eleni Stylianou
Journal:  Mol Diagn Ther       Date:  2018-02       Impact factor: 4.074

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