Literature DB >> 26948891

The Complete Genome Sequences, Unique Mutational Spectra, and Developmental Potency of Adult Neurons Revealed by Cloning.

Jennifer L Hazen1, Gregory G Faust2, Alberto R Rodriguez3, William C Ferguson1, Svetlana Shumilina2, Royden A Clark2, Michael J Boland1, Greg Martin3, Pavel Chubukov1,4, Rachel K Tsunemoto1,5, Ali Torkamani4, Sergey Kupriyanov3, Ira M Hall6,7, Kristin K Baldwin1,5.   

Abstract

Somatic mutation in neurons is linked to neurologic disease and implicated in cell-type diversification. However, the origin, extent, and patterns of genomic mutation in neurons remain unknown. We established a nuclear transfer method to clonally amplify the genomes of neurons from adult mice for whole-genome sequencing. Comprehensive mutation detection and independent validation revealed that individual neurons harbor ∼100 unique mutations from all classes but lack recurrent rearrangements. Most neurons contain at least one gene-disrupting mutation and rare (0-2) mobile element insertions. The frequency and gene bias of neuronal mutations differ from other lineages, potentially due to novel mechanisms governing postmitotic mutation. Fertile mice were cloned from several neurons, establishing the compatibility of mutated adult neuronal genomes with reprogramming to pluripotency and development.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 26948891      PMCID: PMC4795965          DOI: 10.1016/j.neuron.2016.02.004

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  95 in total

1.  Chromosomal variation in neurons of the developing and adult mammalian nervous system.

Authors:  S K Rehen; M J McConnell; D Kaushal; M A Kingsbury; A H Yang; J Chun
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

2.  Assessment of the developmental totipotency of neural cells in the cerebral cortex of mouse embryo by nuclear transfer.

Authors:  Y Yamazaki; H Makino; K Hamaguchi-Hamada; S Hamada; H Sugino; E Kawase; T Miyata; M Ogawa; R Yanagimachi; T Yagi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

Review 3.  Recent advancements in cloning by somatic cell nuclear transfer.

Authors:  Atsuo Ogura; Kimiko Inoue; Teruhiko Wakayama
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

4.  Mouse embryonic stem (ES) cell lines established from neuronal cell-derived cloned blastocysts.

Authors:  E Kawase; Y Yamazaki; T Yagi; R Yanagimachi; R A Pedersen
Journal:  Genesis       Date:  2000 Nov-Dec       Impact factor: 2.487

5.  Landscape of somatic retrotransposition in human cancers.

Authors:  Eunjung Lee; Rebecca Iskow; Lixing Yang; Omer Gokcumen; Psalm Haseley; Lovelace J Luquette; Jens G Lohr; Christopher C Harris; Li Ding; Richard K Wilson; David A Wheeler; Richard A Gibbs; Raju Kucherlapati; Charles Lee; Peter V Kharchenko; Peter J Park
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

6.  Monoclonal mice generated by nuclear transfer from mature B and T donor cells.

Authors:  Konrad Hochedlinger; Rudolf Jaenisch
Journal:  Nature       Date:  2002-02-10       Impact factor: 49.962

7.  Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.

Authors:  Gilad D Evrony; Xuyu Cai; Eunjung Lee; L Benjamin Hills; Princess C Elhosary; Hillel S Lehmann; J J Parker; Kutay D Atabay; Edward C Gilmore; Annapurna Poduri; Peter J Park; Christopher A Walsh
Journal:  Cell       Date:  2012-10-26       Impact factor: 41.582

8.  YAHA: fast and flexible long-read alignment with optimal breakpoint detection.

Authors:  Gregory G Faust; Ira M Hall
Journal:  Bioinformatics       Date:  2012-07-24       Impact factor: 6.937

9.  Transposable elements in TDP-43-mediated neurodegenerative disorders.

Authors:  Wanhe Li; Ying Jin; Lisa Prazak; Molly Hammell; Josh Dubnau
Journal:  PLoS One       Date:  2012-09-05       Impact factor: 3.240

10.  Rate of de novo mutations and the importance of father's age to disease risk.

Authors:  Augustine Kong; Michael L Frigge; Gisli Masson; Soren Besenbacher; Patrick Sulem; Gisli Magnusson; Sigurjon A Gudjonsson; Asgeir Sigurdsson; Aslaug Jonasdottir; Adalbjorg Jonasdottir; Wendy S W Wong; Gunnar Sigurdsson; G Bragi Walters; Stacy Steinberg; Hannes Helgason; Gudmar Thorleifsson; Daniel F Gudbjartsson; Agnar Helgason; Olafur Th Magnusson; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  41 in total

Review 1.  Detecting Somatic Mutations in Normal Cells.

Authors:  Yanmei Dou; Heather D Gold; Lovelace J Luquette; Peter J Park
Journal:  Trends Genet       Date:  2018-05-03       Impact factor: 11.639

Review 2.  The Retrotransposon storm and the dangers of a Collyer's genome.

Authors:  Josh Dubnau
Journal:  Curr Opin Genet Dev       Date:  2018-05-08       Impact factor: 5.578

Review 3.  Single-cell analysis of diversity in human stem cell-derived neurons.

Authors:  Lise J Harbom; Nadine Michel; Michael J McConnell
Journal:  Cell Tissue Res       Date:  2017-11-29       Impact factor: 5.249

4.  Genome aging: somatic mutation in the brain links age-related decline with disease and nominates pathogenic mechanisms.

Authors:  Michael A Lodato; Christopher A Walsh
Journal:  Hum Mol Genet       Date:  2019-10-15       Impact factor: 6.150

5.  Insights into the role of somatic mosaicism in the brain.

Authors:  Apuã C M Paquola; Jennifer A Erwin; Fred H Gage
Journal:  Curr Opin Syst Biol       Date:  2016-12-09

Review 6.  Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.

Authors:  Michael J McConnell; John V Moran; Alexej Abyzov; Schahram Akbarian; Taejeong Bae; Isidro Cortes-Ciriano; Jennifer A Erwin; Liana Fasching; Diane A Flasch; Donald Freed; Javier Ganz; Andrew E Jaffe; Kenneth Y Kwan; Minseok Kwon; Michael A Lodato; Ryan E Mills; Apua C M Paquola; Rachel E Rodin; Chaggai Rosenbluh; Nenad Sestan; Maxwell A Sherman; Joo Heon Shin; Saera Song; Richard E Straub; Jeremy Thorpe; Daniel R Weinberger; Alexander E Urban; Bo Zhou; Fred H Gage; Thomas Lehner; Geetha Senthil; Christopher A Walsh; Andrew Chess; Eric Courchesne; Joseph G Gleeson; Jeffrey M Kidd; Peter J Park; Jonathan Pevsner; Flora M Vaccarino
Journal:  Science       Date:  2017-04-27       Impact factor: 47.728

7.  Influence of donor age on induced pluripotent stem cells.

Authors:  Valentina Lo Sardo; William Ferguson; Galina A Erikson; Eric J Topol; Kristin K Baldwin; Ali Torkamani
Journal:  Nat Biotechnol       Date:  2016-12-12       Impact factor: 54.908

8.  Replacing reprogramming factors with antibodies selected from combinatorial antibody libraries.

Authors:  Joel W Blanchard; Jia Xie; Nadja El-Mecharrafie; Simon Gross; Sohyon Lee; Richard A Lerner; Kristin K Baldwin
Journal:  Nat Biotechnol       Date:  2017-09-11       Impact factor: 54.908

Review 9.  Building a lineage from single cells: genetic techniques for cell lineage tracking.

Authors:  Mollie B Woodworth; Kelly M Girskis; Christopher A Walsh
Journal:  Nat Rev Genet       Date:  2017-01-23       Impact factor: 53.242

Review 10.  Bioinformatic and biological avenues for understanding alcohol use disorder.

Authors:  Emily K Grantham; Sean P Farris
Journal:  Alcohol       Date:  2018-08-23       Impact factor: 2.405

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