Literature DB >> 31578549

Genome aging: somatic mutation in the brain links age-related decline with disease and nominates pathogenic mechanisms.

Michael A Lodato1,2,3,4,5, Christopher A Walsh1,2,3,4.   

Abstract

Aging is a mysterious process, not only controlled genetically but also subject to random damage that can accumulate over time. While DNA damage and subsequent mutation in somatic cells were first proposed as drivers of aging more than 60 years ago, whether and to what degree these processes shape the neuronal genome in the human brain could not be tested until recent technological breakthroughs related to single-cell whole-genome sequencing. Indeed, somatic single-nucleotide variants (SNVs) increase with age in the human brain, in a somewhat stochastic process that may nonetheless be controlled by underlying genetic programs. Evidence from the literature suggests that in addition to demonstrated increases in somatic SNVs during aging in normal brains, somatic mutation may also play a role in late-onset, sporadic neurodegenerative diseases, such as Alzheimer's disease and Parkinson's disease. In this review, we will discuss somatic mutation in the human brain, mechanisms by which somatic mutations occur and can be controlled, and how this process can impact human health.
© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2019        PMID: 31578549      PMCID: PMC6872434          DOI: 10.1093/hmg/ddz191

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  90 in total

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Journal:  Nature       Date:  2014-06-29       Impact factor: 49.962

3.  Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.

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Journal:  N Engl J Med       Date:  2014-11-26       Impact factor: 91.245

4.  Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.

Authors:  Taejeong Bae; Livia Tomasini; Jessica Mariani; Bo Zhou; Tanmoy Roychowdhury; Daniel Franjic; Mihovil Pletikos; Reenal Pattni; Bo-Juen Chen; Elisa Venturini; Bridget Riley-Gillis; Nenad Sestan; Alexander E Urban; Alexej Abyzov; Flora M Vaccarino
Journal:  Science       Date:  2017-12-07       Impact factor: 47.728

5.  Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.

Authors:  Chenghang Zong; Sijia Lu; Alec R Chapman; X Sunney Xie
Journal:  Science       Date:  2012-12-21       Impact factor: 47.728

Review 6.  Endogenous DNA damage in humans: a review of quantitative data.

Authors:  Rinne De Bont; Nik van Larebeke
Journal:  Mutagenesis       Date:  2004-05       Impact factor: 3.000

7.  Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain.

Authors:  Xuyu Cai; Gilad D Evrony; Hillel S Lehmann; Princess C Elhosary; Bhaven K Mehta; Annapurna Poduri; Christopher A Walsh
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

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Journal:  Nat Neurosci       Date:  2017-07-17       Impact factor: 24.884

9.  Detectable clonal mosaicism from birth to old age and its relationship to cancer.

Authors:  Cathy C Laurie; Cecelia A Laurie; Kenneth Rice; Kimberly F Doheny; Leila R Zelnick; Caitlin P McHugh; Hua Ling; Kurt N Hetrick; Elizabeth W Pugh; Chris Amos; Qingyi Wei; Li-e Wang; Jeffrey E Lee; Kathleen C Barnes; Nadia N Hansel; Rasika Mathias; Denise Daley; Terri H Beaty; Alan F Scott; Ingo Ruczinski; Rob B Scharpf; Laura J Bierut; Sarah M Hartz; Maria Teresa Landi; Neal D Freedman; Lynn R Goldin; David Ginsburg; Jun Li; Karl C Desch; Sara S Strom; William J Blot; Lisa B Signorello; Sue A Ingles; Stephen J Chanock; Sonja I Berndt; Loic Le Marchand; Brian E Henderson; Kristine R Monroe; John A Heit; Mariza de Andrade; Sebastian M Armasu; Cynthia Regnier; William L Lowe; M Geoffrey Hayes; Mary L Marazita; Eleanor Feingold; Jeffrey C Murray; Mads Melbye; Bjarke Feenstra; Jae H Kang; Janey L Wiggs; Gail P Jarvik; Andrew N McDavid; Venkatraman E Seshan; Daniel B Mirel; Andrew Crenshaw; Nataliya Sharopova; Anastasia Wise; Jess Shen; David R Crosslin; David M Levine; Xiuwen Zheng; Jenna I Udren; Siiri Bennett; Sarah C Nelson; Stephanie M Gogarten; Matthew P Conomos; Patrick Heagerty; Teri Manolio; Louis R Pasquale; Christopher A Haiman; Neil Caporaso; Bruce S Weir
Journal:  Nat Genet       Date:  2012-05-06       Impact factor: 38.330

10.  Somatic alpha-synuclein mutations in Parkinson's disease: hypothesis and preliminary data.

Authors:  Christos Proukakis; Henry Houlden; Anthony H Schapira
Journal:  Mov Disord       Date:  2013-05-14       Impact factor: 10.338

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  16 in total

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Review 3.  Singling out motor neurons in the age of single-cell transcriptomics.

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4.  COSMC mutations reduce T-synthase activity in advanced Alzheimer's disease.

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5.  Female vulnerability to the effects of smoking on health outcomes in older people.

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6.  Cerebrospinal fluid liquid biopsy for detecting somatic mosaicism in brain.

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Journal:  Brain Commun       Date:  2021-01-21

7.  Investigation of Somatic Mutations in Human Brains Targeting Genes Associated With Parkinson's Disease.

Authors:  Melissa Leija-Salazar; Alan Pittman; Katya Mokretar; Huw Morris; Anthony H Schapira; Christos Proukakis
Journal:  Front Neurol       Date:  2020-10-22       Impact factor: 4.003

8.  Similar burden of pathogenic coding variants in exceptionally long-lived individuals and individuals without exceptional longevity.

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Journal:  Aging Cell       Date:  2020-08-29       Impact factor: 9.304

9.  Somatic TARDBP variants as a cause of semantic dementia.

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10.  In Vivo Reprogramming Ameliorates Aging Features in Dentate Gyrus Cells and Improves Memory in Mice.

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