Literature DB >> 26933744

DNA Charge Transport: from Chemical Principles to the Cell.

Anna R Arnold1, Michael A Grodick1, Jacqueline K Barton2.   

Abstract

The DNA double helix has captured the imagination of many, bringing it to the forefront of biological research. DNA has unique features that extend our interest into areas of chemistry, physics, material science, and engineering. Our laboratory has focused on studies of DNA charge transport (CT), wherein charges can efficiently travel long molecular distances through the DNA helix while maintaining an exquisite sensitivity to base pair π-stacking. Because DNA CT chemistry reports on the integrity of the DNA duplex, this property may be exploited to develop electrochemical devices to detect DNA lesions and DNA-binding proteins. Furthermore, studies now indicate that DNA CT may also be used in the cell by, for example, DNA repair proteins, as a cellular diagnostic, in order to scan the genome to localize efficiently to damage sites. In this review, we describe this evolution of DNA CT chemistry from the discovery of fundamental chemical principles to applications in diagnostic strategies and possible roles in biology.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26933744      PMCID: PMC4803044          DOI: 10.1016/j.chembiol.2015.11.010

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  97 in total

1.  ATP-stimulated, DNA-mediated redox signaling by XPD, a DNA repair and transcription helicase.

Authors:  Timothy P Mui; Jill O Fuss; Justin P Ishida; John A Tainer; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2011-09-22       Impact factor: 15.419

2.  Using metal complex reduced states to monitor the oxidation of DNA.

Authors:  Eric D Olmon; Michael G Hill; Jacqueline K Barton
Journal:  Inorg Chem       Date:  2011-11-01       Impact factor: 5.165

Review 3.  Overview of base excision repair biochemistry.

Authors:  Yun-Jeong Kim; David M Wilson
Journal:  Curr Mol Pharmacol       Date:  2012-01       Impact factor: 3.339

4.  DNA charge transport as a first step in coordinating the detection of lesions by repair proteins.

Authors:  Pamela A Sontz; Timothy P Mui; Jill O Fuss; John A Tainer; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

5.  The soxRS response of Escherichia coli can be induced in the absence of oxidative stress and oxygen by modulation of NADPH content.

Authors:  Adriana R Krapp; María Victoria Humbert; Néstor Carrillo
Journal:  Microbiology (Reading)       Date:  2010-12-22       Impact factor: 2.777

Review 6.  Dps biomineralizing proteins: multifunctional architects of nature.

Authors:  Kornelius Zeth
Journal:  Biochem J       Date:  2012-08-01       Impact factor: 3.857

7.  The Campylobacter jejuni Dps homologue is important for in vitro biofilm formation and cecal colonization of poultry and may serve as a protective antigen for vaccination.

Authors:  James R Theoret; Kerry K Cooper; Bereket Zekarias; Kenneth L Roland; Bibiana F Law; Roy Curtiss; Lynn A Joens
Journal:  Clin Vaccine Immunol       Date:  2012-07-11

8.  DNA electrochemistry with tethered methylene blue.

Authors:  Catrina G Pheeney; Jacqueline K Barton
Journal:  Langmuir       Date:  2012-04-18       Impact factor: 3.882

9.  Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes.

Authors:  Daili J A Netz; Carrie M Stith; Martin Stümpfig; Gabriele Köpf; Daniel Vogel; Heide M Genau; Joseph L Stodola; Roland Lill; Peter M J Burgers; Antonio J Pierik
Journal:  Nat Chem Biol       Date:  2011-11-27       Impact factor: 15.040

10.  Dps promotes survival of nontypeable Haemophilus influenzae in biofilm communities in vitro and resistance to clearance in vivo.

Authors:  Bing Pang; Wenzhou Hong; Nancy D Kock; W Edward Swords
Journal:  Front Cell Infect Microbiol       Date:  2012-05-03       Impact factor: 5.293

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  39 in total

Review 1.  Sensing DNA through DNA Charge Transport.

Authors:  Theodore J Zwang; Edmund C M Tse; Jacqueline K Barton
Journal:  ACS Chem Biol       Date:  2018-06-01       Impact factor: 5.100

2.  Charge Transfer between [4Fe4S] Proteins and DNA Is Unidirectional: Implications for Biomolecular Signaling.

Authors:  Ruijie D Teo; Benjamin J G Rousseau; Elizabeth R Smithwick; Rosa Di Felice; David N Beratan; Agostino Migliore
Journal:  Chem       Date:  2018-10-25       Impact factor: 22.804

3.  G-quadruplex-forming promoter sequences enable transcriptional activation in response to oxidative stress.

Authors:  Bogdan I Fedeles
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

4.  Electron transfer characteristics of 2'-deoxy-2'-fluoro-arabinonucleic acid, a nucleic acid with enhanced chemical stability.

Authors:  Ruijie D Teo; Kiriko Terai; Agostino Migliore; David N Beratan
Journal:  Phys Chem Chem Phys       Date:  2018-09-07       Impact factor: 3.676

5.  A comprehensive mechanistic model of iron metabolism in Saccharomyces cerevisiae.

Authors:  Paul A Lindahl
Journal:  Metallomics       Date:  2019-09-18       Impact factor: 4.526

6.  Redox Signaling through DNA.

Authors:  Elizabeth O'Brien; Rebekah M B Silva; Jacqueline K Barton
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

Review 7.  Excessive Reactive Oxygen Species and Exotic DNA Lesions as an Exploitable Liability.

Authors:  Safnas F AbdulSalam; Fathima Shazna Thowfeik; Edward J Merino
Journal:  Biochemistry       Date:  2016-09-13       Impact factor: 3.162

8.  Electrochemistry of the [4Fe4S] Cluster in Base Excision Repair Proteins: Tuning the Redox Potential with DNA.

Authors:  Phillip L Bartels; Andy Zhou; Anna R Arnold; Nicole N Nuñez; Frank N Crespilho; Sheila S David; Jacqueline K Barton
Journal:  Langmuir       Date:  2017-03-02       Impact factor: 3.882

9.  Characterization of the DNA-Mediated Oxidation of Dps, A Bacterial Ferritin.

Authors:  Anna R Arnold; Andy Zhou; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2016-08-29       Impact factor: 15.419

10.  Nitric Oxide Modulates Endonuclease III Redox Activity by a 800 mV Negative Shift upon [Fe4S4] Cluster Nitrosylation.

Authors:  Levi A Ekanger; Paul H Oyala; Annie Moradian; Michael J Sweredoski; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2018-09-06       Impact factor: 15.419

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