Literature DB >> 26929366

Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape.

Qin Li1, Anders Wennborg1, Erik Aurell2, Erez Dekel3, Jie-Zhi Zou1, Yuting Xu4, Sui Huang5, Ingemar Ernberg6.   

Abstract

The observed intercellular heterogeneity within a clonal cell population can be mapped as dynamical states clustered around an attractor point in gene expression space, owing to a balance between homeostatic forces and stochastic fluctuations. These dynamics have led to the cancer cell attractor conceptual model, with implications for both carcinogenesis and new therapeutic concepts. Immortalized and malignant EBV-carrying B-cell lines were used to explore this model and characterize the detailed structure of cell attractors. Any subpopulation selected from a population of cells repopulated the whole original basin of attraction within days to weeks. Cells at the basin edges were unstable and prone to apoptosis. Cells continuously changed states within their own attractor, thus driving the repopulation, as shown by fluorescent dye tracing. Perturbations of key regulatory genes induced a jump to a nearby attractor. Using the Fokker-Planck equation, this cell population behavior could be described as two virtual, opposing influences on the cells: one attracting toward the center and the other promoting diffusion in state space (noise). Transcriptome analysis suggests that these forces result from high-dimensional dynamics of the gene regulatory network. We propose that they can be generalized to all cancer cell populations and represent intrinsic behaviors of tumors, offering a previously unidentified characteristic for studying cancer.

Entities:  

Keywords:  cancer cell attractor; cell heterogeneity; cell population dynamics; edge cells; gene regulatory network

Mesh:

Substances:

Year:  2016        PMID: 26929366      PMCID: PMC4790994          DOI: 10.1073/pnas.1519210113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Authors:  E Aurell; K Sneppen
Journal:  Phys Rev Lett       Date:  2002-01-08       Impact factor: 9.161

2.  Cell fates as high-dimensional attractor states of a complex gene regulatory network.

Authors:  Sui Huang; Gabriel Eichler; Yaneer Bar-Yam; Donald E Ingber
Journal:  Phys Rev Lett       Date:  2005-04-01       Impact factor: 9.161

3.  Variability and memory of protein levels in human cells.

Authors:  Alex Sigal; Ron Milo; Ariel Cohen; Naama Geva-Zatorsky; Yael Klein; Yuvalal Liron; Nitzan Rosenfeld; Tamar Danon; Natalie Perzov; Uri Alon
Journal:  Nature       Date:  2006-11-19       Impact factor: 49.962

Review 4.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

5.  New strategy for mapping the human genome based on a novel procedure for construction of jumping libraries.

Authors:  E R Zabarovsky; F Boldog; R Erlandsson; V I Kashuba; R L Allikmets; Z Marcsek; L L Kisselev; E Stanbridge; G Klein; J Sumegi
Journal:  Genomics       Date:  1991-12       Impact factor: 5.736

Review 6.  The epigenetic progenitor origin of human cancer.

Authors:  Andrew P Feinberg; Rolf Ohlsson; Steven Henikoff
Journal:  Nat Rev Genet       Date:  2006-01       Impact factor: 53.242

7.  Functional interaction of Oct transcription factors with the family of repeats in Epstein-Barr virus oriP.

Authors:  J Almqvist; J Zou; Y Linderson; C Borestrom; E Altiok; H Zetterberg; L Rymo; S Pettersson; I Ernberg
Journal:  J Gen Virol       Date:  2005-05       Impact factor: 3.891

8.  Determination of lymphocyte division by flow cytometry.

Authors:  A B Lyons; C R Parish
Journal:  J Immunol Methods       Date:  1994-05-02       Impact factor: 2.303

Review 9.  Non-genetic cancer cell plasticity and therapy-induced stemness in tumour relapse: 'What does not kill me strengthens me'.

Authors:  A O Pisco; S Huang
Journal:  Br J Cancer       Date:  2015-05-12       Impact factor: 7.640

10.  Epstein-Barr virus latency switch in human B-cells: a physico-chemical model.

Authors:  Maria Werner; Ingemar Ernberg; Jiezhi Zou; Jenny Almqvist; Erik Aurell
Journal:  BMC Syst Biol       Date:  2007-08-31
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  34 in total

Review 1.  Intracellular and intercellular signaling networks in cancer initiation, development and precision anti-cancer therapy: RAS acts as contextual signaling hub.

Authors:  Peter Csermely; Tamás Korcsmáros; Ruth Nussinov
Journal:  Semin Cell Dev Biol       Date:  2016-07-06       Impact factor: 7.727

Review 2.  Convergence of spectrums: neuronal gene network states in autism spectrum disorder.

Authors:  Josefa M Sullivan; Silvia De Rubeis; Anne Schaefer
Journal:  Curr Opin Neurobiol       Date:  2019-06-18       Impact factor: 6.627

Review 3.  A systems approach to clinical oncology uses deep phenotyping to deliver personalized care.

Authors:  James T Yurkovich; Qiang Tian; Nathan D Price; Leroy Hood
Journal:  Nat Rev Clin Oncol       Date:  2019-10-16       Impact factor: 66.675

4.  Murine melanoma cells incomplete reprogramming using non-viral vector.

Authors:  D A D Câmara; A S Porcacchia; A S Costa; R A Azevedo; I Kerkis
Journal:  Cell Prolif       Date:  2017-06-15       Impact factor: 6.831

Review 5.  Processes on the emergent landscapes of biochemical reaction networks and heterogeneous cell population dynamics: differentiation in living matters.

Authors:  Sui Huang; Fangting Li; Joseph X Zhou; Hong Qian
Journal:  J R Soc Interface       Date:  2017-05       Impact factor: 4.118

6.  A Nonquiescent "Idling" Population State in Drug-Treated, BRAF-Mutated Melanoma.

Authors:  B Bishal Paudel; Leonard A Harris; Keisha N Hardeman; Arwa A Abugable; Corey E Hayford; Darren R Tyson; Vito Quaranta
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

7.  Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells.

Authors:  Rhishikesh Bargaje; Kalliopi Trachana; Martin N Shelton; Christopher S McGinnis; Joseph X Zhou; Cora Chadick; Savannah Cook; Christopher Cavanaugh; Sui Huang; Leroy Hood
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

8.  Epigenetic plasticity potentiates a rapid cyclical shift to and from an aggressive cancer phenotype.

Authors:  Tong Xu; Hong-Tao Li; Jenny Wei; Meng Li; Tien-Chan Hsieh; Yi-Tsung Lu; Ranjani Lakshminarasimhan; Rong Xu; Emmanuelle Hodara; Gareth Morrison; Hemant Gujar; Suhn Kyong Rhie; Kimberly Siegmund; Gangning Liang; Amir Goldkorn
Journal:  Int J Cancer       Date:  2020-02-22       Impact factor: 7.396

Review 9.  Does Cancer Biology Rely on Parrondo's Principles?

Authors:  Jean-Pascal Capp; Aurora M Nedelcu; Antoine M Dujon; Benjamin Roche; Francesco Catania; Beata Ujvari; Catherine Alix-Panabières; Frédéric Thomas
Journal:  Cancers (Basel)       Date:  2021-05-03       Impact factor: 6.639

10.  A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC.

Authors:  Vishaka Gopalan; Arashdeep Singh; Farid Rashidi Mehrabadi; Li Wang; Eytan Ruppin; H Efsun Arda; Sridhar Hannenhalli
Journal:  Cancer Res       Date:  2021-05-28       Impact factor: 13.312

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