Literature DB >> 15903968

Cell fates as high-dimensional attractor states of a complex gene regulatory network.

Sui Huang1, Gabriel Eichler, Yaneer Bar-Yam, Donald E Ingber.   

Abstract

Cells in multicellular organisms switch between distinct cell fates, such as proliferation or differentiation into specialized cell types. Genome-wide gene regulatory networks govern this behavior. Theoretical studies of complex networks suggest that they can exhibit ordered (stable) dynamics, raising the possibility that cell fates may represent high-dimensional attractor states. We used gene expression profiling to show that trajectories of neutrophil differentiation converge to a common state from different directions of a 2773-dimensional gene expression state space, providing the first experimental evidence for a high-dimensional stable attractor that represents a distinct cellular phenotype.

Keywords:  NASA Discipline Cell Biology; Non-NASA Center

Mesh:

Substances:

Year:  2005        PMID: 15903968     DOI: 10.1103/PhysRevLett.94.128701

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  242 in total

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Authors:  Scott A Ochsner; Christopher M Watkins; Apollo McOwiti; Xueping Xu; Yolanda F Darlington; Michael D Dehart; Austin J Cooney; David L Steffen; Lauren B Becnel; Neil J McKenna
Journal:  Physiol Genomics       Date:  2012-07-10       Impact factor: 3.107

5.  The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation.

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Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

Review 6.  Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.

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Journal:  Development       Date:  2010-07       Impact factor: 6.868

7.  DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks.

Authors:  Margaret J Tse; Brian K Chu; Mahua Roy; Elizabeth L Read
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

8.  Embracing Systems Toxicology at Single-Cell Resolution.

Authors:  Qiang Zhang; W Michael Caudle; Jingbo Pi; Sudin Bhattacharya; Melvin E Andersen; Norbert E Kaminski; Rory B Conolly
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9.  Eukaryotic cells are dynamically ordered or critical but not chaotic.

Authors:  Ilya Shmulevich; Stuart A Kauffman; Maximino Aldana
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-09       Impact factor: 11.205

10.  Systems biology of embryogenesis.

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Journal:  Reprod Fertil Dev       Date:  2010       Impact factor: 2.311

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