Literature DB >> 29371397

Transcriptional and post-transcriptional regulation of autophagy in the yeast Saccharomyces cerevisiae.

Elizabeth Delorme-Axford1, Daniel J Klionsky2.   

Abstract

Autophagy is a highly conserved catabolic pathway that is vital for development, cell survival, and the degradation of dysfunctional organelles and potentially toxic aggregates. Dysregulation of autophagy is associated with cancer, neurodegeneration, and lysosomal storage diseases. Accordingly, autophagy is precisely regulated at multiple levels (transcriptional, post-transcriptional, translational, and post-translational) to prevent aberrant activity. Various model organisms are used to study autophagy, but the baker's yeast Saccharomyces cerevisiae continues to be advantageous for genetic and biochemical analysis of non-selective and selective autophagy. In this Minireview, we focus on the cellular mechanisms that regulate autophagy transcriptionally and post-transcriptionally in S. cerevisiae.
© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  RNA degradation; autophagy; post-translational modification; transcription; vacuole; yeast

Mesh:

Substances:

Year:  2018        PMID: 29371397      PMCID: PMC5900762          DOI: 10.1074/jbc.R117.804641

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  100 in total

1.  Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

Authors:  S V Scott; J Guan; M U Hutchins; J Kim; D J Klionsky
Journal:  Mol Cell       Date:  2001-06       Impact factor: 17.970

2.  Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy.

Authors:  Koji Okamoto; Noriko Kondo-Okamoto; Yoshinori Ohsumi
Journal:  Dev Cell       Date:  2009-07       Impact factor: 12.270

3.  Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus.

Authors:  Keisuke Mochida; Yu Oikawa; Yayoi Kimura; Hiromi Kirisako; Hisashi Hirano; Yoshinori Ohsumi; Hitoshi Nakatogawa
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

Review 4.  How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy.

Authors:  Yuchen Feng; Zhiyuan Yao; Daniel J Klionsky
Journal:  Trends Cell Biol       Date:  2015-03-08       Impact factor: 20.808

Review 5.  Post-translationally-modified structures in the autophagy machinery: an integrative perspective.

Authors:  Hana Popelka; Daniel J Klionsky
Journal:  FEBS J       Date:  2015-07-16       Impact factor: 5.542

6.  Sfl1 functions via the co-repressor Ssn6-Tup1 and the cAMP-dependent protein kinase Tpk2.

Authors:  R S Conlan; D Tzamarias
Journal:  J Mol Biol       Date:  2001-06-22       Impact factor: 5.469

7.  Atg32 is a mitochondrial protein that confers selectivity during mitophagy.

Authors:  Tomotake Kanki; Ke Wang; Yang Cao; Misuzu Baba; Daniel J Klionsky
Journal:  Dev Cell       Date:  2009-07       Impact factor: 12.270

8.  ATG15 encodes a phospholipase and is transcriptionally regulated by YAP1 in Saccharomyces cerevisiae.

Authors:  Visvanathan Ramya; Ram Rajasekharan
Journal:  FEBS Lett       Date:  2016-09-01       Impact factor: 4.124

9.  Identification of histone demethylases in Saccharomyces cerevisiae.

Authors:  Shengjiang Tu; Esther M M Bulloch; Lanhao Yang; Chen Ren; Wei-Chieh Huang; Pang-Hung Hsu; Chein-Hung Chen; Chung-Lin Liao; Hui-Ming Yu; Wan-Sheng Lo; Michael A Freitas; Ming-Daw Tsai
Journal:  J Biol Chem       Date:  2007-03-16       Impact factor: 5.157

10.  Positive regulation in the general amino acid control of Saccharomyces cerevisiae.

Authors:  A G Hinnebusch; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

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  25 in total

Review 1.  On the edge of degradation: Autophagy regulation by RNA decay.

Authors:  Elizabeth Delorme-Axford; Daniel J Klionsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-17       Impact factor: 9.957

Review 2.  Autophagy and disease.

Authors:  Andrew Thorburn
Journal:  J Biol Chem       Date:  2017-11-30       Impact factor: 5.157

Review 3.  Introduction to the Thematic Minireview Series: Autophagy.

Authors:  George N DeMartino
Journal:  J Biol Chem       Date:  2018-02-21       Impact factor: 5.157

4.  The LC3-conjugation machinery specifies cargo loading and secretion of extracellular vesicles.

Authors:  Elizabeth Delorme-Axford; Daniel J Klionsky
Journal:  Autophagy       Date:  2020-05-13       Impact factor: 16.016

5.  The identification of tick autophagy-related genes in Ixodes scapularis responding to amino acid starvation.

Authors:  Xin-Ru Wang; Timothy J Kurtti; Jonathan D Oliver; Ulrike G Munderloh
Journal:  Ticks Tick Borne Dis       Date:  2020-01-31       Impact factor: 3.744

6.  Monitoring of ATG4 Protease Activity During Autophagy in the Model Microalga Chlamydomonas reinhardtii.

Authors:  José L Crespo; M Esther Pérez-Pérez
Journal:  Methods Mol Biol       Date:  2022

Review 7.  Understanding and exploiting the roles of autophagy in plants through multi-omics approaches.

Authors:  Fen Liu; Richard S Marshall; Faqiang Li
Journal:  Plant Sci       Date:  2018-05-22       Impact factor: 4.729

8.  The Paf1 complex transcriptionally regulates the mitochondrial-anchored protein Atg32 leading to activation of mitophagy.

Authors:  Liangde Zheng; Wen-Jie Shu; Yu-Min Li; Muriel Mari; Chaojun Yan; Dehe Wang; Zhao-Hong Yin; Wei Jiang; Yu Zhou; Koji Okamoto; Fulvio Reggiori; Daniel J Klionsky; Zhiyin Song; Hai-Ning Du
Journal:  Autophagy       Date:  2019-09-19       Impact factor: 16.016

9.  Differential regulation of autophagy by STAU1 in alveolar rhabdomyosarcoma and non-transformed skeletal muscle cells.

Authors:  Shekoufeh Almasi; Tara E Crawford Parks; Aymeric Ravel-Chapuis; Alex MacKenzie; Jocelyn Côté; Kyle N Cowan; Bernard J Jasmin
Journal:  Cell Oncol (Dordr)       Date:  2021-04-26       Impact factor: 6.730

10.  Snx4-assisted vacuolar targeting of transcription factors defines a new autophagy pathway for controlling ATG expression.

Authors:  Sara E Hanley; Stephen D Willis; Katrina F Cooper
Journal:  Autophagy       Date:  2021-03-08       Impact factor: 16.016

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