Literature DB >> 26884192

Probing the promiscuity of ent-kaurene oxidases via combinatorial biosynthesis.

Sibongile Mafu1, Meirong Jia1, Jiachen Zi1, Dana Morrone1, Yisheng Wu1, Meimei Xu1, Matthew L Hillwig1, Reuben J Peters2.   

Abstract

The substrate specificity of enzymes from natural products' metabolism is a topic of considerable interest, with potential biotechnological use implicit in the discovery of promiscuous enzymes. However, such studies are often limited by the availability of substrates and authentic standards for identification of the resulting products. Here, a modular metabolic engineering system is used in a combinatorial biosynthetic approach toward alleviating this restriction. In particular, for studies of the multiply reactive cytochrome P450, ent-kaurene oxidase (KO), which is involved in production of the diterpenoid plant hormone gibberellin. Many, but not all, plants make a variety of related diterpenes, whose structural similarity to ent-kaurene makes them potential substrates for KO. Use of combinatorial biosynthesis enabled analysis of more than 20 such potential substrates, as well as structural characterization of 12 resulting unknown products, providing some insight into the underlying structure-function relationships. These results highlight the utility of this approach for investigating the substrate specificity of enzymes from complex natural products' biosynthesis.

Entities:  

Keywords:  cytochrome P450 monooxygenases; enzyme specificity; gibberellins; labdane-related diterpenoids; natural products

Mesh:

Substances:

Year:  2016        PMID: 26884192      PMCID: PMC4780596          DOI: 10.1073/pnas.1512096113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  A modular approach for facile biosynthesis of labdane-related diterpenes.

Authors:  Anthony Cyr; P Ross Wilderman; Mara Determan; Reuben J Peters
Journal:  J Am Chem Soc       Date:  2007-05-05       Impact factor: 15.419

2.  PAML 4: phylogenetic analysis by maximum likelihood.

Authors:  Ziheng Yang
Journal:  Mol Biol Evol       Date:  2007-05-04       Impact factor: 16.240

Review 3.  Engineering natural products using combinatorial biosynthesis and biocatalysis.

Authors:  Hui Zhou; Xinkai Xie; Yi Tang
Journal:  Curr Opin Biotechnol       Date:  2008-11-18       Impact factor: 9.740

4.  Cloning, yeast expression, and characterization of the coupling of two distantly related Arabidopsis thaliana NADPH-cytochrome P450 reductases with P450 CYP73A5.

Authors:  P Urban; C Mignotte; M Kazmaier; F Delorme; D Pompon
Journal:  J Biol Chem       Date:  1997-08-01       Impact factor: 5.157

5.  Increasing diterpene yield with a modular metabolic engineering system in E. coli: comparison of MEV and MEP isoprenoid precursor pathway engineering.

Authors:  Dana Morrone; Luke Lowry; Mara K Determan; David M Hershey; Meimei Xu; Reuben J Peters
Journal:  Appl Microbiol Biotechnol       Date:  2009-09-24       Impact factor: 4.813

6.  An overview of gibberellin metabolism enzyme genes and their related mutants in rice.

Authors:  Tomoaki Sakamoto; Koutarou Miura; Hironori Itoh; Tomoko Tatsumi; Miyako Ueguchi-Tanaka; Kanako Ishiyama; Masatomo Kobayashi; Ganesh K Agrawal; Shin Takeda; Kiyomi Abe; Akio Miyao; Hirohiko Hirochika; Hidemi Kitano; Motoyuki Ashikari; Makoto Matsuoka
Journal:  Plant Physiol       Date:  2004-04-09       Impact factor: 8.340

7.  A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase.

Authors:  Hironori Itoh; Tomoko Tatsumi; Tomoaki Sakamoto; Kazuko Otomo; Tomonobu Toyomasu; Hidemi Kitano; Motoyuki Ashikari; Shigeyuki Ichihara; Makoto Matsuoka
Journal:  Plant Mol Biol       Date:  2004-03       Impact factor: 4.076

8.  Engineering a mevalonate pathway in Escherichia coli for production of terpenoids.

Authors:  Vincent J J Martin; Douglas J Pitera; Sydnor T Withers; Jack D Newman; Jay D Keasling
Journal:  Nat Biotechnol       Date:  2003-06-01       Impact factor: 54.908

9.  CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice.

Authors:  Sivakumar Swaminathan; Dana Morrone; Qiang Wang; D Bruce Fulton; Reuben J Peters
Journal:  Plant Cell       Date:  2009-10-13       Impact factor: 11.277

10.  Cloning of the Arabidopsis ent-kaurene oxidase gene GA3.

Authors:  C A Helliwell; C C Sheldon; M R Olive; A R Walker; J A Zeevaart; W J Peacock; E S Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

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  14 in total

1.  Catalytic Plasticity of Germacrene A Oxidase Underlies Sesquiterpene Lactone Diversification.

Authors:  Trinh-Don Nguyen; Moonhyuk Kwon; Soo-Un Kim; Conrad Fischer; Dae-Kyun Ro
Journal:  Plant Physiol       Date:  2019-09-18       Impact factor: 8.340

2.  Predicting novel substrates for enzymes with minimal experimental effort with active learning.

Authors:  Dante A Pertusi; Matthew E Moura; James G Jeffryes; Siddhant Prabhu; Bradley Walters Biggs; Keith E J Tyo
Journal:  Metab Eng       Date:  2017-10-10       Impact factor: 9.783

3.  CRISPR-Based Assessment of Gene Specialization in the Gibberellin Metabolic Pathway in Rice.

Authors:  Xiao Chen; Xuejian Tian; Lan Xue; Xiaohui Zhang; Sihai Yang; M Brian Traw; Ju Huang
Journal:  Plant Physiol       Date:  2019-06-03       Impact factor: 8.340

4.  Extreme promiscuity of a bacterial and a plant diterpene synthase enables combinatorial biosynthesis.

Authors:  Meirong Jia; Kevin C Potter; Reuben J Peters
Journal:  Metab Eng       Date:  2016-04-07       Impact factor: 9.783

5.  CYP71Z18 overexpression confers elevated blast resistance in transgenic rice.

Authors:  Qinqin Shen; Qingyu Pu; Jin Liang; Hongjie Mao; Jiang Liu; Qiang Wang
Journal:  Plant Mol Biol       Date:  2019-05-15       Impact factor: 4.076

6.  Comparative transcriptome profiling reveals the basis of differential sheath blight disease response in tolerant and susceptible rice genotypes.

Authors:  Pankajini Samal; Kutubuddin A Molla; Archana Bal; Soham Ray; Harekrushna Swain; Ansuman Khandual; Pritiranjan Sahoo; Motilal Behera; Sarika Jaiswal; Asif Iquebal; Mridul Chakraborti; Lambodar Behera; Meera K Kar; Arup K Mukherjee
Journal:  Protoplasma       Date:  2021-04-03       Impact factor: 3.356

7.  Probing the Single Key Amino Acid Responsible for the Novel Catalytic Function of ent-Kaurene Oxidase Supported by NADPH-Cytochrome P450 Reductases in Tripterygium wilfordii.

Authors:  Ping Su; Hongyu Guan; Yifeng Zhang; Xing Wang; Linhui Gao; Yujun Zhao; Tianyuan Hu; Jiawei Zhou; Baowei Ma; Lichan Tu; Yuru Tong; Luqi Huang; Wei Gao
Journal:  Front Plant Sci       Date:  2017-10-13       Impact factor: 5.753

8.  Multiple genes recruited from hormone pathways partition maize diterpenoid defences.

Authors:  Yezhang Ding; Katherine M Murphy; Elly Poretsky; Sibongile Mafu; Bing Yang; Si Nian Char; Shawn A Christensen; Evan Saldivar; Mengxi Wu; Qiang Wang; Lexiang Ji; Robert J Schmitz; Karl A Kremling; Edward S Buckler; Zhouxin Shen; Steven P Briggs; Jörg Bohlmann; Andrew Sher; Gabriel Castro-Falcon; Chambers C Hughes; Alisa Huffaker; Philipp Zerbe; Eric A Schmelz
Journal:  Nat Plants       Date:  2019-09-16       Impact factor: 15.793

9.  Abietane-Type Diterpenoids Inhibit Protein Tyrosine Phosphatases by Stabilizing an Inactive Enzyme Conformation.

Authors:  Michael K Hjortness; Laura Riccardi; Akarawin Hongdusit; Sophia Ruppe; Mengxia Zhao; Edward Y Kim; Peter H Zwart; Banumathi Sankaran; Haribabu Arthanari; Marcelo C Sousa; Marco De Vivo; Jerome M Fox
Journal:  Biochemistry       Date:  2018-09-14       Impact factor: 3.162

10.  Interdependent evolution of biosynthetic gene clusters for momilactone production in rice.

Authors:  Naoki Kitaoka; Juan Zhang; Richard K Oyagbenro; Benjamin Brown; Yisheng Wu; Bing Yang; Zhaohu Li; Reuben J Peters
Journal:  Plant Cell       Date:  2021-04-17       Impact factor: 11.277

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