Literature DB >> 26851913

Ab initio molecular dynamics with nuclear quantum effects at classical cost: Ring polymer contraction for density functional theory.

Ondrej Marsalek1, Thomas E Markland1.   

Abstract

Path integral molecular dynamics simulations, combined with an ab initio evaluation of interactions using electronic structure theory, incorporate the quantum mechanical nature of both the electrons and nuclei, which are essential to accurately describe systems containing light nuclei. However, path integral simulations have traditionally required a computational cost around two orders of magnitude greater than treating the nuclei classically, making them prohibitively costly for most applications. Here we show that the cost of path integral simulations can be dramatically reduced by extending our ring polymer contraction approach to ab initio molecular dynamics simulations. By using density functional tight binding as a reference system, we show that our ring polymer contraction scheme gives rapid and systematic convergence to the full path integral density functional theory result. We demonstrate the efficiency of this approach in ab initio simulations of liquid water and the reactive protonated and deprotonated water dimer systems. We find that the vast majority of the nuclear quantum effects are accurately captured using contraction to just the ring polymer centroid, which requires the same number of density functional theory calculations as a classical simulation. Combined with a multiple time step scheme using the same reference system, which allows the time step to be increased, this approach is as fast as a typical classical ab initio molecular dynamics simulation and 35× faster than a full path integral calculation, while still exactly including the quantum sampling of nuclei. This development thus offers a route to routinely include nuclear quantum effects in ab initio molecular dynamics simulations at negligible computational cost.

Entities:  

Year:  2016        PMID: 26851913     DOI: 10.1063/1.4941093

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

2.  A new approach to estimate atomic energies.

Authors:  Dariush H Zadeh
Journal:  J Mol Model       Date:  2019-11-28       Impact factor: 1.810

3.  Direct observation of ultrafast hydrogen bond strengthening in liquid water.

Authors:  Jie Yang; Riccardo Dettori; J Pedro F Nunes; Nanna H List; Elisa Biasin; Martin Centurion; Zhijiang Chen; Amy A Cordones; Daniel P Deponte; Tony F Heinz; Michael E Kozina; Kathryn Ledbetter; Ming-Fu Lin; Aaron M Lindenberg; Mianzhen Mo; Anders Nilsson; Xiaozhe Shen; Thomas J A Wolf; Davide Donadio; Kelly J Gaffney; Todd J Martinez; Xijie Wang
Journal:  Nature       Date:  2021-08-25       Impact factor: 49.962

4.  Using Machine Learning to Greatly Accelerate Path Integral Ab Initio Molecular Dynamics.

Authors:  Chenghan Li; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-01-04       Impact factor: 6.006

5.  Affordable Ab Initio Path Integral for Thermodynamic Properties via Molecular Dynamics Simulations Using Semiempirical Reference Potential.

Authors:  Yuanfei Xue; Jia-Ning Wang; Wenxin Hu; Jun Zheng; Yongle Li; Xiaoliang Pan; Yan Mo; Yihan Shao; Lu Wang; Ye Mei
Journal:  J Phys Chem A       Date:  2021-12-12       Impact factor: 2.944

Review 6.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

7.  Hydrogen-bond structure dynamics in bulk water: insights from ab initio simulations with coupled cluster theory.

Authors:  Jinfeng Liu; Xiao He; John Z H Zhang; Lian-Wen Qi
Journal:  Chem Sci       Date:  2017-12-04       Impact factor: 9.825

8.  On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations.

Authors:  Leonid Pereyaslavets; Igor Kurnikov; Ganesh Kamath; Oleg Butin; Alexey Illarionov; Igor Leontyev; Michael Olevanov; Michael Levitt; Roger D Kornberg; Boris Fain
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-20       Impact factor: 11.205

9.  Ab initio molecular dynamics simulations of liquid water using high quality meta-GGA functionals.

Authors:  Luis Ruiz Pestana; Narbe Mardirossian; Martin Head-Gordon; Teresa Head-Gordon
Journal:  Chem Sci       Date:  2017-02-27       Impact factor: 9.825

10.  Structure and Dynamics of Water at the Water-Air Interface Using First-Principles Molecular Dynamics Simulations. II. NonLocal vs Empirical van der Waals Corrections.

Authors:  Mayank Dodia; Tatsuhiko Ohto; Sho Imoto; Yuki Nagata
Journal:  J Chem Theory Comput       Date:  2019-05-30       Impact factor: 6.006

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