| Literature DB >> 31074989 |
Mayank Dodia1, Tatsuhiko Ohto2, Sho Imoto1, Yuki Nagata1.
Abstract
van der Waals (vdW) correction schemes have been recognized to be essential for an accurate description of liquid water in first-principles molecular dynamics simulation. The description of the structure and dynamics of water is governed by the type of the vdW corrections. So far, two vdW correction schemes have been often used: empirical vdW corrections and nonlocal vdW corrections. In this paper, we assess the influence of the empirical vs nonlocal vdW correction schemes on the structure and dynamics of water at the water-air interface. Since the structure of water at the water-air interface is established by a delicate balance of hydrogen bond formation and breaking, the simulation at the water-air interface provides a unique platform to testify as to the heterogeneous interaction of water. We used the metrics [ Ohto et al. J. Chem. Theory Comput. , 2019 , 15 , 595 - 602 ] which are directly connected with the sum-frequency generation spectroscopic measurement. We find that the overall performance of nonlocal vdW methods is either similar or worse compared to the empirical vdW methods. We also investigated the performance of the optB88-DRSLL functional, which showed slightly less accuracy than the revPBE-D3 method. We conclude that the revPBE-D3 method shows the best performance for describing the interfacial water.Entities:
Year: 2019 PMID: 31074989 PMCID: PMC6750744 DOI: 10.1021/acs.jctc.9b00253
Source DB: PubMed Journal: J Chem Theory Comput ISSN: 1549-9618 Impact factor: 6.006
List of Simulations Methods Discussed
| notation | exchange | correlation | vdW correction | remarks |
|---|---|---|---|---|
| PBE | PBE | PBE | ||
| PBE-D2 | PBE | PBE | D2 | |
| PBE-D3(0) | PBE | PBE | D3(0) | |
| PBE-D3(BJ) | PBE | PBE | D3(BJ) | |
| PBE-D3m(BJ) | PBE | PBE | D3m(BJ) | |
| PBE-DRSLL | PBE | VWN | DRSLL | |
| PBE-rVV10 | PBE | PBE | rVV10 | |
| revPBE | revPBE | PBE | ||
| revPBE-D2 | revPBE | PBE | D2 | |
| revPBE-D3(0) | revPBE | PBE | D3(0) | |
| revPBE-D3(BJ) | revPBE | PBE | D3(BJ) | |
| revPBE-DRSLL | revPBE | VWN | DRSLL | |
| revPBE-rVV10 | revPBE | PBE | rVV10 | |
| optB88-DRSLL | optB88 | VWN | DRSLL |
The data are obtained from our previous work.[11]
Reference (12).
Reference (13).
Reference (14).
Reference (15).
Reference (20).
Reference (22).
Reference (29).
Bulk and Interfacial Water Data Using Various DFT+vdW Methodsa
| PBE | revPBE | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| optB88-DRSLL | none | D2 | D3(0) | D3(BJ) | D3m(BJ) | DRSLL | rVV10 | none | D2 | D3(0) | D3(BJ) | DRSLL | rVV10 | POLI2VS | exp. | |
| 1.07 | 0.91 | 1.02 | 1.03 | 1.00 | 1.00 | 1.12 | 1.03 | 0.69 | 0.94 | 0.94 | 0.93 | 0.93 | 1.06 | 0.99 | 1.00 | |
| 8.08 | 9.50 | 8.43 | 8.44 | 8.70 | 8.63 | 7.70 | 8.36 | 12.5 | 9.22 | 9.18 | 9.31 | 9.31 | 8.14 | 8.76 | ||
| δ (Å) | 1.02 | 1.08 | 1.06 | 1.01 | 1.05 | 1.02 | 0.81 | 0.96 | 2.06 | 1.06 | 1.17 | 1.16 | 1.06 | 1.03 | 1.29 | |
| DA (%) | 7 | 12 | 7 | 8 | 9 | 9 | 6 | 7 | 27 | 12 | 11 | 14 | 19 | 9 | 12 | |
| DAA (%) | 13 | 15 | 12 | 13 | 14 | 13 | 14 | 13 | 11 | 14 | 13 | 14 | 17 | 13 | 16 | |
| DDA (%) | 16 | 17 | 17 | 17 | 17 | 17 | 17 | 17 | 13 | 18 | 17 | 18 | 19 | 17 | 17 | |
| free OH (%) | 20 | 27 | 19 | 21 | 22 | 22 | 20 | 19 | 38 | 26 | 24 | 28 | 35 | 23 | 28 | |
| <ϑ> (deg) | 52 | 54 | 51 | 53 | 51 | 55 | 56 | 48 | 76 | 65 | 66 | 65 | 72 | 56 | 61 | |
| τf (ps) | 0.15 | 0.19 | 0.16 | 0.15 | 0.18 | 0.17 | 0.09 | 0.21 | 0.19 | 0.12 | 0.11 | 0.15 | 0.10 | 0.14 | 0.11 | |
| τs (ps) | 1.69 | 2.18 | 1.99 | 1.87 | 2.04 | 1.86 | 1.00 | 2.42 | 1.05 | 1.03 | 1.06 | 1.25 | 0.51 | 1.48 | 1.02 | 1.1 |
| 3.12 | 3.67 | 3.62 | 3.44 | 3.78 | 3.69 | 2.54 | 3.73 | 2.74 | 2.97 | 2.72 | 3.12 | 2.18 | 2.95 | 2.73 | 2.58 | |
| 2.75 | 2.75 | 2.71 | 2.72 | 2.71 | 2.71 | 2.82 | 2.70 | 2.86 | 2.77 | 2.81 | 2.77 | 2.92 | 2.74 | 2.78 | 2.80 | |
| 0.62 | 0.18 | 0.31 | 0.36 | 0.18 | 0.21 | − | 0.23 | 0.46 | 0.56 | 0.69 | 0.42 | − | 0.67 | 0.83 | 0.84 | |
| 3.24 | 3.36 | 3.25 | 3.26 | 3.27 | 3.28 | − | 3.24 | 3.61 | 3.42 | 3.46 | 3.36 | − | 3.23 | 3.43 | 3.47 | |
The average error bars for ρ, zG, δ, fractions, ⟨ϑ⟩, τf, τs, hmax, rmax, hmin, and rmin are 0.01 g/cm3, 0.1 Å, 0.2 Å, 1.0%, 1.5 degrees, 0.01 ps, 0.2 ps, 0.1, 0.01 Å, 0.4, and 0.02 Å, respectively.
Reference (32).
Reference (84).
Figure 1Time correlation functions of the free O–D group of the interfacial water molecules.
Figure 2Oxygen–oxygen RDF of water simulated in the FPMD simulation with the (a) PBE XC functional, (b) revPBE XC functional, and (c) optB88-DRSLL level of theory. The shaded area represents the experimental data from X-ray diffraction measurements.[84]
Score of Various DFT+vdW Functionals for Bulk and Interfacial Data
| PBE | revPBE | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| optB88-DRSLL | none | D2 | D3(0) | D3(BJ) | D3m(BJ) | DRSLL | rVV10 | none | D2 | D3(0) | D3(BJ) | DRSLL | rVV10 | |
| 0.66 | 0.90 | 0.22 | 0.28 | 0.05 | 0.02 | 1.16 | 0.32 | 2.98 | 0.59 | 0.57 | 0.70 | 0.70 | 0.60 | |
| δ | 0.96 | 0.73 | 0.81 | 0.96 | 0.83 | 0.96 | 1.67 | 1.16 | 2.69 | 0.80 | 0.40 | 0.47 | 0.82 | 0.91 |
| fraction | 1.33 | 0.15 | 1.46 | 1.22 | 0.94 | 1.04 | 1.40 | 1.44 | 1.75 | 0.29 | 0.62 | 0.04 | 1.26 | 0.90 |
| <ϑ> | 1.05 | 0.85 | 1.27 | 0.95 | 1.26 | 0.81 | 0.58 | 1.52 | 1.71 | 0.39 | 0.47 | 0.37 | 1.25 | 0.62 |
| τs | 1.20 | 2.09 | 1.74 | 1.52 | 1.83 | 1.51 | 0.04 | 2.51 | 0.06 | 0.02 | 0.07 | 0.42 | 0.91 | 0.83 |
| 1.08 | 2.15 | 2.07 | 1.71 | 2.38 | 2.21 | 0.07 | 2.27 | 0.32 | 0.79 | 0.28 | 1.08 | 0.78 | 0.75 | |
| 0.77 | 0.77 | 1.39 | 1.24 | 1.39 | 1.39 | 0.31 | 1.54 | 0.93 | 0.46 | 0.15 | 0.46 | 1.85 | 0.93 | |
| 1.16 | 3.43 | 2.75 | 2.49 | 3.41 | 3.28 | − | 3.17 | 1.97 | 1.45 | 0.75 | 2.17 | − | 0.88 | |
| 1.98 | 0.95 | 1.89 | 1.81 | 1.72 | 1.63 | − | 1.98 | 1.20 | 0.43 | 0.09 | 0.95 | − | 2.06 | |
| final score | 1.07 | 1.09 | 1.25 | 1.12 | 1.19 | 1.08 | 0.82 | 1.53 | 1.72 | 0.48 | 0.41 | 0.53 | 0.93 | 0.84 |