Literature DB >> 16876429

Hydrogen exchange and mass spectrometry: A historical perspective.

S Walter Englander1.   

Abstract

Protein molecules naturally emit streams of information-rich signals in the language of hydrogen exchange concerning the intimate details of their stability, dynamics, function, changes therein, and effects thereon, all resolved to the level of their individual amino acids. The effort to measure protein hydrogen exchange behavior, understand the underlying chemistry and structural physics of hydrogen exchange processes, and use this information to learn about protein properties and function has continued for 50 years. Recent work uses mass spectrometric analysis together with an earlier proteolytic fragmentation method to extend the hydrogen exchange capability to large biologically interesting proteins. This article briefly reviews the advances that have led us to this point and the understanding that has so far been achieved.

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Year:  2006        PMID: 16876429      PMCID: PMC3427778          DOI: 10.1016/j.jasms.2006.06.006

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  33 in total

1.  Protein hydrogen exchange studied by the fragment separation method.

Authors:  J J Englander; J R Rogero; S W Englander
Journal:  Anal Biochem       Date:  1985-05-15       Impact factor: 3.365

Review 2.  Mechanisms of cooperativity and allosteric regulation in proteins.

Authors:  M F Perutz
Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

3.  Individual breathing reactions measured by functional labeling and hydrogen exchange methods.

Authors:  J R Rogero; J J Englander; S W Englander
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

4.  Isotope effects in peptide group hydrogen exchange.

Authors:  G P Connelly; Y Bai; M F Jeng; S W Englander
Journal:  Proteins       Date:  1993-09

Review 5.  Hydrogen exchange and structural dynamics of proteins and nucleic acids.

Authors:  S W Englander; N R Kallenbach
Journal:  Q Rev Biophys       Date:  1983-11       Impact factor: 5.318

6.  Penetration of small molecules into proteins studied by quenching of phosphorescence and fluorescence.

Authors:  D B Calhoun; J M Vanderkooi; S W Englander
Journal:  Biochemistry       Date:  1983-03-29       Impact factor: 3.162

7.  Quenching of room temperature protein phosphorescence by added small molecules.

Authors:  D B Calhoun; S W Englander; W W Wright; J M Vanderkooi
Journal:  Biochemistry       Date:  1988-11-01       Impact factor: 3.162

8.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

9.  Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation.

Authors:  Z Zhang; D L Smith
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

10.  A high energy structure change in hemoglobin studied by difference hydrogen exchange.

Authors:  R K Liem; D B Calhoun; J J Englander; S W Englander
Journal:  J Biol Chem       Date:  1980-11-25       Impact factor: 5.157

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  164 in total

1.  'Fixed charge' chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility.

Authors:  Xiao Zhou; Yali Lu; Wenjing Wang; Babak Borhan; Gavin E Reid
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-08       Impact factor: 3.109

2.  Hydrogen-deuterium exchange mass spectrometry reveals the interaction of Fenna-Matthews-Olson protein and chlorosome CsmA protein.

Authors:  Richard Y-C Huang; Jianzhong Wen; Robert E Blankenship; Michael L Gross
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

3.  HJURP uses distinct CENP-A surfaces to recognize and to stabilize CENP-A/histone H4 for centromere assembly.

Authors:  Emily A Bassett; Jamie DeNizio; Meghan C Barnhart-Dailey; Tanya Panchenko; Nikolina Sekulic; Danielle J Rogers; Daniel R Foltz; Ben E Black
Journal:  Dev Cell       Date:  2012-03-08       Impact factor: 12.270

4.  Probing protein surface with a solvent mimetic carbene coupled to detection by mass spectrometry.

Authors:  Gabriela E Gómez; Mariana R Mundo; Patricio O Craig; José M Delfino
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-18       Impact factor: 3.109

5.  Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D.

Authors:  Daniele Fabris; Eizadora T Yu
Journal:  J Mass Spectrom       Date:  2010-08       Impact factor: 1.982

6.  Multiple proteolytic events in caspase-6 self-activation impact conformations of discrete structural regions.

Authors:  Kevin B Dagbay; Jeanne A Hardy
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-01       Impact factor: 11.205

7.  Hydrogen exchange-mass spectrometry measures stapled peptide conformational dynamics and predicts pharmacokinetic properties.

Authors:  Xiangguo Eric Shi; Thomas E Wales; Carl Elkin; Noriyuki Kawahata; John R Engen; D Allen Annis
Journal:  Anal Chem       Date:  2013-11-14       Impact factor: 6.986

8.  Differential isotopic enrichment to facilitate characterization of asymmetric multimeric proteins using hydrogen/deuterium exchange mass spectrometry.

Authors:  Devrishi Goswami; Steve Tuske; Bruce D Pascal; Joseph D Bauman; Disha Patel; Eddy Arnold; Patrick R Griffin
Journal:  Anal Chem       Date:  2015-03-25       Impact factor: 6.986

9.  Improving yields of deuterated, methyl labeled protein by growing in H2O.

Authors:  Evan S O'Brien; Danny W Lin; Brian Fuglestad; Matthew A Stetz; Travis Gosse; Cecilia Tommos; A Joshua Wand
Journal:  J Biomol NMR       Date:  2018-08-02       Impact factor: 2.835

10.  Nucleotide- and activator-dependent structural and dynamic changes of arp2/3 complex monitored by hydrogen/deuterium exchange and mass spectrometry.

Authors:  Wendy D Zencheck; Hui Xiao; Brad J Nolen; Ruth Hogue Angeletti; Thomas D Pollard; Steven C Almo
Journal:  J Mol Biol       Date:  2009-03-17       Impact factor: 5.469

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