Literature DB >> 26789729

Single-cell profiling approaches to probing tumor heterogeneity.

Bee Luan Khoo1,2, Parthiv Kant Chaudhuri1, Naveen Ramalingam3, Daniel Shao Weng Tan4,5, Chwee Teck Lim1,2,6, Majid Ebrahimi Warkiani2,7.   

Abstract

Tumor heterogeneity is a major hindrance in cancer classification, diagnosis and treatment. Recent technological advances have begun to reveal the true extent of its heterogeneity. Single-cell analysis (SCA) is emerging as an important approach to detect variations in morphology, genetic or proteomic expression. In this review, we revisit the issue of inter- and intra-tumor heterogeneity, and list various modes of SCA techniques (cell-based, nucleic acid-based, protein-based, metabolite-based and lipid-based) presently used for cancer characterization. We further discuss the advantages of SCA over pooled cell analysis, as well as the limitations of conventional techniques. Emerging trends, such as high-throughput sequencing, are also mentioned as improved means for cancer profiling. Collectively, these applications have the potential for breakthroughs in cancer treatment.
© 2016 UICC.

Entities:  

Keywords:  cancer; heterogeneity; microfluidics; molecular analysis; single-cell analysis; tumors

Mesh:

Year:  2016        PMID: 26789729     DOI: 10.1002/ijc.30006

Source DB:  PubMed          Journal:  Int J Cancer        ISSN: 0020-7136            Impact factor:   7.396


  17 in total

Review 1.  Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.

Authors:  Karin D Rodland; Paul Piehowski; Richard D Smith
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

Review 2.  Marine Mollusk-Derived Agents with Antiproliferative Activity as Promising Anticancer Agents to Overcome Chemotherapy Resistance.

Authors:  Maria Letizia Ciavatta; Florence Lefranc; Marianna Carbone; Ernesto Mollo; Margherita Gavagnin; Tania Betancourt; Ramesh Dasari; Alexander Kornienko; Robert Kiss
Journal:  Med Res Rev       Date:  2016-12-07       Impact factor: 12.944

Review 3.  Developmental origins and oncogenic pathways in malignant brain tumors.

Authors:  Q Richard Lu; Lily Qian; Xianyao Zhou
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2019-04-03       Impact factor: 5.814

Review 4.  New insights of extrachromosomal DNA in tumorigenesis and therapeutic resistance of cancer.

Authors:  Hui Qiu; Zhi-Ying Shao; Xin Wen; Long-Zhen Zhang
Journal:  Am J Cancer Res       Date:  2020-12-01       Impact factor: 6.166

Review 5.  Application and prospects of single cell sequencing in tumors.

Authors:  Ruo Han Huang; Le Xin Wang; Jing He; Wen Gao
Journal:  Biomark Res       Date:  2021-12-11

6.  Expansion of patient-derived circulating tumor cells from liquid biopsies using a CTC microfluidic culture device.

Authors:  Bee Luan Khoo; Gianluca Grenci; Ying Bena Lim; Soo Chin Lee; Jongyoon Han; Chwee Teck Lim
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

Review 7.  High resolution laser mass spectrometry bioimaging.

Authors:  Kermit K Murray; Chinthaka A Seneviratne; Suman Ghorai
Journal:  Methods       Date:  2016-03-10       Impact factor: 3.608

8.  A Self-Digitization Dielectrophoretic (SD-DEP) Chip for High-Efficiency Single-Cell Capture, On-Demand Compartmentalization, and Downstream Nucleic Acid Analysis.

Authors:  Yuling Qin; Li Wu; Thomas Schneider; Gloria S Yen; Jiasi Wang; Shihan Xu; Min Li; Amy L Paguirigan; Jordan L Smith; Jerald P Radich; Robbyn K Anand; Daniel T Chiu
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-27       Impact factor: 15.336

Review 9.  Biology of lung cancer: genetic mutation, epithelial-mesenchymal transition, and cancer stem cells.

Authors:  Takashi Aoi
Journal:  Gen Thorac Cardiovasc Surg       Date:  2016-07-04

Review 10.  Tumorigenesis as a process of gradual loss of original cell identity and gain of properties of neural precursor/progenitor cells.

Authors:  Ying Cao
Journal:  Cell Biosci       Date:  2017-11-07       Impact factor: 7.133

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