Literature DB >> 29794536

Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.

Karin D Rodland1, Paul Piehowski, Richard D Smith.   

Abstract

Breaking down the silos between disciplines to accelerate the pace of cancer research is a key paradigm for the Cancer Moonshot. Molecular analyses of cancer biology have tended to segregate between a focus on nucleic acids-DNA, RNA, and their modifications-and a focus on proteins and protein function. Proteogenomics represents a fusion of those two approaches, leveraging the strengths of each to provide a more integrated vision of the flow of information from DNA to RNA to protein and eventually function at the molecular level. Proteogenomic studies have been incorporated into multiple activities associated with the Cancer Moonshot, demonstrating substantial added value. Innovative study designs integrating genomic, transcriptomic, and proteomic data, particularly those using clinically relevant samples and involving clinical trials, are poised to provide new insights regarding cancer risk, progression, and response to therapy.

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Year:  2018        PMID: 29794536      PMCID: PMC5975970          DOI: 10.1097/PPO.0000000000000315

Source DB:  PubMed          Journal:  Cancer J        ISSN: 1528-9117            Impact factor:   3.360


  66 in total

1.  The Department of Defense Serum Repository (DoDSR): A Study of Questions.

Authors:  Kevin L Russell
Journal:  Mil Med       Date:  2015-10       Impact factor: 1.437

2.  Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.

Authors:  Kristin E Burnum-Johnson; Song Nie; Cameron P Casey; Matthew E Monroe; Daniel J Orton; Yehia M Ibrahim; Marina A Gritsenko; Therese R W Clauss; Anil K Shukla; Ronald J Moore; Samuel O Purvine; Tujin Shi; Weijun Qian; Tao Liu; Erin S Baker; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2016-09-25       Impact factor: 5.911

3.  Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples.

Authors:  Ying Zhu; Rui Zhao; Paul D Piehowski; Ronald J Moore; Sujung Lim; Victoria J Orphan; Ljiljana Paša-Tolić; Wei-Jun Qian; Richard D Smith; Ryan T Kelly
Journal:  Int J Mass Spectrom       Date:  2017-09-01       Impact factor: 1.986

4.  Using SMART design to improve symptom management among cancer patients: A study protocol.

Authors:  Alla Sikorskii; Gwen Wyatt; Rebecca Lehto; David Victorson; Terry Badger; Thaddeus Pace
Journal:  Res Nurs Health       Date:  2017-11-11       Impact factor: 2.228

Review 5.  Proteogenomics for understanding oncology: recent advances and future prospects.

Authors:  Yashwanth Subbannayya; Sneha M Pinto; Harsha Gowda; T S Keshava Prasad
Journal:  Expert Rev Proteomics       Date:  2016-01-25       Impact factor: 3.940

Review 6.  SEER cancer registry biospecimen research: yesterday and tomorrow.

Authors:  Sean F Altekruse; Gabriel E Rosenfeld; Danielle M Carrick; Emilee J Pressman; Sheri D Schully; Leah E Mechanic; Kathleen A Cronin; Brenda Y Hernandez; Charles F Lynch; Wendy Cozen; Muin J Khoury; Lynne T Penberthy
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-12       Impact factor: 4.254

Review 7.  Predictive biomarkers investigated in glioblastoma.

Authors:  Emeline Tabouret; Olivier Chinot; Marc Sanson; Anderson Loundou; Khê Hoang-Xuan; Jean-Yves Delattre; Ahmed Idbaih
Journal:  Expert Rev Mol Diagn       Date:  2014-08-05       Impact factor: 5.225

Review 8.  Tumor Heterogeneity, Single-Cell Sequencing, and Drug Resistance.

Authors:  Felix Schmidt; Thomas Efferth
Journal:  Pharmaceuticals (Basel)       Date:  2016-06-16

9.  Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines.

Authors:  Ashley A Powell; Amirali H Talasaz; Haiyu Zhang; Marc A Coram; Anupama Reddy; Glenn Deng; Melinda L Telli; Ranjana H Advani; Robert W Carlson; Joseph A Mollick; Shruti Sheth; Allison W Kurian; James M Ford; Frank E Stockdale; Stephen R Quake; R Fabian Pease; Michael N Mindrinos; Gyan Bhanot; Shanaz H Dairkee; Ronald W Davis; Stefanie S Jeffrey
Journal:  PLoS One       Date:  2012-05-07       Impact factor: 3.240

Review 10.  Advances in single-cell RNA sequencing and its applications in cancer research.

Authors:  Sibo Zhu; Tao Qing; Yuanting Zheng; Li Jin; Leming Shi
Journal:  Oncotarget       Date:  2017-05-16
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  2 in total

Review 1.  Mass spectrometry-based targeted proteomics for analysis of protein mutations.

Authors:  Tai-Tu Lin; Tong Zhang; Reta B Kitata; Tao Liu; Richard D Smith; Wei-Jun Qian; Tujin Shi
Journal:  Mass Spectrom Rev       Date:  2021-10-31       Impact factor: 9.011

2.  The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome.

Authors:  Lazaro Hiram Betancourt; Jeovanis Gil; Aniel Sanchez; Viktória Doma; Magdalena Kuras; Jimmy Rodriguez Murillo; Erika Velasquez; Uğur Çakır; Yonghyo Kim; Yutaka Sugihara; Indira Pla Parada; Beáta Szeitz; Roger Appelqvist; Elisabet Wieslander; Charlotte Welinder; Natália Pinto de Almeida; Nicole Woldmar; Matilda Marko-Varga; Jonatan Eriksson; Krzysztof Pawłowski; Bo Baldetorp; Christian Ingvar; Håkan Olsson; Lotta Lundgren; Henrik Lindberg; Henriett Oskolas; Boram Lee; Ethan Berge; Marie Sjögren; Carina Eriksson; Dasol Kim; Ho Jeong Kwon; Beatrice Knudsen; Melinda Rezeli; Johan Malm; Runyu Hong; Peter Horvath; A Marcell Szász; József Tímár; Sarolta Kárpáti; Peter Horvatovich; Tasso Miliotis; Toshihide Nishimura; Harubumi Kato; Erik Steinfelder; Madalina Oppermann; Ken Miller; Francesco Florindi; Quimin Zhou; Gilberto B Domont; Luciana Pizzatti; Fábio C S Nogueira; Leticia Szadai; István Balázs Németh; Henrik Ekedahl; David Fenyö; György Marko-Varga
Journal:  Clin Transl Med       Date:  2021-07
  2 in total

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