Literature DB >> 30003660

A Self-Digitization Dielectrophoretic (SD-DEP) Chip for High-Efficiency Single-Cell Capture, On-Demand Compartmentalization, and Downstream Nucleic Acid Analysis.

Yuling Qin1, Li Wu1, Thomas Schneider1, Gloria S Yen1, Jiasi Wang1, Shihan Xu1, Min Li2, Amy L Paguirigan3, Jordan L Smith3, Jerald P Radich3, Robbyn K Anand2, Daniel T Chiu1.   

Abstract

The design and fabrication of a self-digitization dielectrophoretic (SD-DEP) chip with simple components for single-cell manipulation and downstream nucleic acid analysis is presented. The device employed the traditional DEP and insulator DEP to create the local electric field that is tailored to approximately the size of single cells, enabling highly efficient single-cell capture. The multistep procedures of cell manipulation, compartmentalization, lysis, and analysis were performed in the integrated microdevice, consuming minimal reagents, minimizing contamination, decreasing lysate dilution, and increasing assay sensitivity. The platform developed here could be a promising and powerful tool in single-cell research for precise medicine.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  dielectrophoresis; loop-mediated isothermal amplification; microfluidic devices; self-digitization; single-cell analysis

Mesh:

Substances:

Year:  2018        PMID: 30003660      PMCID: PMC6457344          DOI: 10.1002/anie.201807314

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  40 in total

1.  Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics.

Authors:  Huifa Zhang; Gareth Jenkins; Yuan Zou; Zhi Zhu; Chaoyong James Yang
Journal:  Anal Chem       Date:  2012-04-04       Impact factor: 6.986

2.  Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification.

Authors:  Yusi Fu; Chunmei Li; Sijia Lu; Wenxiong Zhou; Fuchou Tang; X Sunney Xie; Yanyi Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-04       Impact factor: 11.205

3.  A microengraving method for rapid selection of single cells producing antigen-specific antibodies.

Authors:  J Christopher Love; Jehnna L Ronan; Gijsbert M Grotenbreg; Annemarthe G van der Veen; Hidde L Ploegh
Journal:  Nat Biotechnol       Date:  2006-05-14       Impact factor: 54.908

4.  Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Authors:  Yann Marcy; Cleber Ouverney; Elisabeth M Bik; Tina Lösekann; Natalia Ivanova; Hector Garcia Martin; Ernest Szeto; Darren Platt; Philip Hugenholtz; David A Relman; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

5.  Quantifying genetically inserted fluorescent protein in single iPS cells to monitor Nanog expression using electroactive microchamber arrays.

Authors:  Soo Hyeon Kim; Xiaoming He; Shohei Kaneda; Jiro Kawada; Dominique Fourmy; Hiroyuki Noji; Teruo Fujii
Journal:  Lab Chip       Date:  2014-02-21       Impact factor: 6.799

6.  Digital LAMP in a sample self-digitization (SD) chip.

Authors:  Alexander Gansen; Alison M Herrick; Ivan K Dimov; Luke P Lee; Daniel T Chiu
Journal:  Lab Chip       Date:  2012-03-07       Impact factor: 6.799

7.  Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

Authors:  Anoop P Patel; Itay Tirosh; John J Trombetta; Alex K Shalek; Shawn M Gillespie; Hiroaki Wakimoto; Daniel P Cahill; Brian V Nahed; William T Curry; Robert L Martuza; David N Louis; Orit Rozenblatt-Rosen; Mario L Suvà; Aviv Regev; Bradley E Bernstein
Journal:  Science       Date:  2014-06-12       Impact factor: 47.728

Review 8.  Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices.

Authors:  Sanjay M Prakadan; Alex K Shalek; David A Weitz
Journal:  Nat Rev Genet       Date:  2017-04-10       Impact factor: 53.242

Review 9.  Heterogeneity in immune responses: from populations to single cells.

Authors:  Rahul Satija; Alex K Shalek
Journal:  Trends Immunol       Date:  2014-04-16       Impact factor: 16.687

10.  Self-digitization microfluidic chip for absolute quantification of mRNA in single cells.

Authors:  Alison M Thompson; Alexander Gansen; Amy L Paguirigan; Jason E Kreutz; Jerald P Radich; Daniel T Chiu
Journal:  Anal Chem       Date:  2014-11-25       Impact factor: 6.986

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  4 in total

Review 1.  Chemical Analysis of Single Cells and Organelles.

Authors:  Keke Hu; Tho D K Nguyen; Stefania Rabasco; Pieter E Oomen; Andrew G Ewing
Journal:  Anal Chem       Date:  2020-12-07       Impact factor: 6.986

2.  SD-chip enabled quantitative detection of HIV RNA using digital nucleic acid sequence-based amplification (dNASBA).

Authors:  Jiasi Wang; Jason E Kreutz; Alison M Thompson; Yuling Qin; Allison M Sheen; Jingang Wang; Li Wu; Shihan Xu; Ming Chang; Dana N Raugi; Robert A Smith; Geoffrey S Gottlieb; Daniel T Chiu
Journal:  Lab Chip       Date:  2018-11-06       Impact factor: 6.799

3.  Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells.

Authors:  Yu-Heng Cheng; Yu-Chih Chen; Eric Lin; Riley Brien; Seungwon Jung; Yu-Ting Chen; Woncheol Lee; Zhijian Hao; Saswat Sahoo; Hyun Min Kang; Jason Cong; Monika Burness; Sunitha Nagrath; Max S Wicha; Euisik Yoon
Journal:  Nat Commun       Date:  2019-05-15       Impact factor: 14.919

Review 4.  Methods and platforms for analysis of nucleic acids from single-cell based on microfluidics.

Authors:  Luyao Liu; Xiaobin Dong; Yunping Tu; Guijun Miao; Zhongping Zhang; Lulu Zhang; Zewen Wei; Duli Yu; Xianbo Qiu
Journal:  Microfluid Nanofluidics       Date:  2021-09-22       Impact factor: 2.529

  4 in total

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