Literature DB >> 33414985

New insights of extrachromosomal DNA in tumorigenesis and therapeutic resistance of cancer.

Hui Qiu1,2, Zhi-Ying Shao3, Xin Wen1,2, Long-Zhen Zhang1,2,4.   

Abstract

In the past few decades, the studies of extrachromosomal DNA (ecDNA), which existed independently of chromosomes, were tepid. However, recent studies on ecDNA rekindled the enthusiasm of oncologists for further studying ecDNA. In this review, we summarized the recent advances of ecDNA in oncogenesis and oncotherapy. ecDNA consists of highly open chromatin, and its circular structure enables ultra-long-range chromatin contacts. ecDNA is not inherited in accordance with Mendel's laws. Furthermore, ecDNA is widely existed in cancer cells, but almost never found in normal cells. It has been found that ecDNA played important roles in tumorigenesis and tumor progression, including oncogene amplification, tumor heterogeneity, enhancer hijacking and genomic rearrangement. More importantly, ecDNA is closely related to cancer treatment resistance. In hence, further understanding of ecDNA would contribute to developing innovative targeting ecDNA therapies. AJCR
Copyright © 2020.

Entities:  

Keywords:  Extrachromosomal DNA; double minutes; therapeutic resistance; tumorigenesis

Year:  2020        PMID: 33414985      PMCID: PMC7783743     

Source DB:  PubMed          Journal:  Am J Cancer Res        ISSN: 2156-6976            Impact factor:   6.166


  61 in total

Review 1.  Single-cell profiling approaches to probing tumor heterogeneity.

Authors:  Bee Luan Khoo; Parthiv Kant Chaudhuri; Naveen Ramalingam; Daniel Shao Weng Tan; Chwee Teck Lim; Majid Ebrahimi Warkiani
Journal:  Int J Cancer       Date:  2016-02-16       Impact factor: 7.396

Review 2.  Clonal evolution in cancer.

Authors:  Mel Greaves; Carlo C Maley
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962

3.  The presence of tumor extrachomosomal circular DNA (ecDNA) as a component of liquid biopsy in blood.

Authors:  Fatemeh Khatami; Bagher Larijani; Seyed Mohammad Tavangar
Journal:  Med Hypotheses       Date:  2018-02-26       Impact factor: 1.538

Review 4.  Using functional genomics to overcome therapeutic resistance in hematological malignancies.

Authors:  Francesca Alvarez-Calderon; Mark A Gregory; James DeGregori
Journal:  Immunol Res       Date:  2013-03       Impact factor: 2.829

5.  Double minute amplification of mutant PDGF receptor α in a mouse glioma model.

Authors:  Hongyan Zou; Rui Feng; Yong Huang; Joseph Tripodi; Vesna Najfeld; Nadejda M Tsankova; Maryam Jahanshahi; Lorin E Olson; Philippe Soriano; Roland H Friedel
Journal:  Sci Rep       Date:  2015-02-16       Impact factor: 4.379

6.  Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma.

Authors:  Nicolas Vogt; Anne Gibaud; Frédéric Lemoine; Pierre de la Grange; Michelle Debatisse; Bernard Malfoy
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 16.971

7.  Structure and evolution of double minutes in diagnosis and relapse brain tumors.

Authors:  Ke Xu; Liang Ding; Ti-Cheng Chang; Ying Shao; Jason Chiang; Heather Mulder; Shuoguo Wang; Tim I Shaw; Ji Wen; Laura Hover; Clay McLeod; Yong-Dong Wang; John Easton; Michael Rusch; James Dalton; James R Downing; David W Ellison; Jinghui Zhang; Suzanne J Baker; Gang Wu
Journal:  Acta Neuropathol       Date:  2018-09-28       Impact factor: 17.088

8.  EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA.

Authors:  Utkrisht Rajkumar; Kristen Turner; Jens Luebeck; Viraj Deshpande; Manmohan Chandraker; Paul Mischel; Vineet Bafna
Journal:  iScience       Date:  2019-10-21

9.  Novel role for non-homologous end joining in the formation of double minutes in methotrexate-resistant colon cancer cells.

Authors:  Xiangning Meng; Xiuying Qi; Huanhuan Guo; Mengdi Cai; Chunxiang Li; Jing Zhu; Feng Chen; Huan Guo; Jie Li; Yuzhen Zhao; Peng Liu; Xueyuan Jia; Jingcui Yu; Chunyu Zhang; Wenjing Sun; Yang Yu; Yan Jin; Jing Bai; Mingrong Wang; Jesusa Rosales; Ki-Young Lee; Songbin Fu
Journal:  J Med Genet       Date:  2014-12-23       Impact factor: 6.318

10.  Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands.

Authors:  Florian Haller; Matthias Bieg; Rainer Will; Cindy Körner; Dieter Weichenhan; Alexander Bott; Naveed Ishaque; Pavlo Lutsik; Evgeny A Moskalev; Sarina K Mueller; Marion Bähr; Angelika Woerner; Birgit Kaiser; Claudia Scherl; Marlen Haderlein; Kortine Kleinheinz; Rainer Fietkau; Heinrich Iro; Roland Eils; Arndt Hartmann; Christoph Plass; Stefan Wiemann; Abbas Agaimy
Journal:  Nat Commun       Date:  2019-01-21       Impact factor: 14.919

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  2 in total

Review 1.  Palindromes in DNA-A Risk for Genome Stability and Implications in Cancer.

Authors:  Marina Svetec Miklenić; Ivan Krešimir Svetec
Journal:  Int J Mol Sci       Date:  2021-03-11       Impact factor: 5.923

Review 2.  3D chromatin architecture and transcription regulation in cancer.

Authors:  Siwei Deng; Yuliang Feng; Siim Pauklin
Journal:  J Hematol Oncol       Date:  2022-05-04       Impact factor: 23.168

  2 in total

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