Literature DB >> 26780407

Addicting diverse bacteria to a noncanonical amino acid.

Drew S Tack1, Jared W Ellefson1, Ross Thyer1, Bo Wang1, Jimmy Gollihar1, Matthew T Forster1, Andrew D Ellington1.   

Abstract

Engineered orthogonal translation systems have greatly enabled the expansion of the genetic code using noncanonical amino acids (NCAAs). However, the impact of NCAAs on organismal evolution remains unclear, in part because it is difficult to force the adoption of new genetic codes in organisms. By reengineering TEM-1 β-lactamase to be dependent on a NCAA, we maintained bacterial NCAA dependence for hundreds of generations without escape.

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Year:  2016        PMID: 26780407     DOI: 10.1038/nchembio.2002

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  27 in total

1.  A set of temperature sensitive-replication/-segregation and temperature resistant plasmid vectors with different copy numbers and in an isogenic background (chloramphenicol, kanamycin, lacZ, repA, par, polA).

Authors:  T Hashimoto-Gotoh; M Yamaguchi; K Yasojima; A Tsujimura; Y Wakabayashi; Y Watanabe
Journal:  Gene       Date:  2000-01-04       Impact factor: 3.688

2.  LowModeMD--implicit low-mode velocity filtering applied to conformational search of macrocycles and protein loops.

Authors:  Paul Labute
Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

Review 3.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

4.  2D depiction of protein-ligand complexes.

Authors:  Alex M Clark; Paul Labute
Journal:  J Chem Inf Model       Date:  2007-08-23       Impact factor: 4.956

5.  Evolving tRNA(Sec) for efficient canonical incorporation of selenocysteine.

Authors:  Ross Thyer; Scott A Robotham; Jennifer S Brodbelt; Andrew D Ellington
Journal:  J Am Chem Soc       Date:  2014-12-23       Impact factor: 15.419

6.  A genetically encoded metabolically stable analogue of phosphotyrosine in Escherichia coli.

Authors:  Jianming Xie; Lubica Supekova; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2007-07-09       Impact factor: 5.100

7.  One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution.

Authors:  C T Chung; S L Niemela; R H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

8.  Recoded organisms engineered to depend on synthetic amino acids.

Authors:  Alexis J Rovner; Adrian D Haimovich; Spencer R Katz; Zhe Li; Michael W Grome; Brandon M Gassaway; Miriam Amiram; Jaymin R Patel; Ryan R Gallagher; Jesse Rinehart; Farren J Isaacs
Journal:  Nature       Date:  2015-01-21       Impact factor: 49.962

9.  Evolution of phage with chemically ambiguous proteomes.

Authors:  Jamie M Bacher; James J Bull; Andrew D Ellington
Journal:  BMC Evol Biol       Date:  2003-12-10       Impact factor: 3.260

10.  An engineered bacterium auxotrophic for an unnatural amino acid: a novel biological containment system.

Authors:  Yusuke Kato
Journal:  PeerJ       Date:  2015-09-15       Impact factor: 2.984

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  19 in total

1.  Enhancing protein stability with extended disulfide bonds.

Authors:  Tao Liu; Yan Wang; Xiaozhou Luo; Jack Li; Sean A Reed; Han Xiao; Travis S Young; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

2.  A Strategy for Creating Organisms Dependent on Noncanonical Amino Acids.

Authors:  Weimin Xuan; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-27       Impact factor: 15.336

Review 3.  Future prospects for noncanonical amino acids in biological therapeutics.

Authors:  Arlinda Rezhdo; Mariha Islam; Manjie Huang; James A Van Deventer
Journal:  Curr Opin Biotechnol       Date:  2019-04-08       Impact factor: 9.740

4.  Chemical biology Addicting bugs to nonstandard amino acids.

Authors:  Allison Doerr
Journal:  Nat Methods       Date:  2016-03       Impact factor: 28.547

Review 5.  At the Interface of Chemical and Biological Synthesis: An Expanded Genetic Code.

Authors:  Han Xiao; Peter G Schultz
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

Review 6.  Rewriting the Genetic Code.

Authors:  Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal:  Annu Rev Microbiol       Date:  2017-07-11       Impact factor: 15.500

Review 7.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

Review 8.  Expanding and reprogramming the genetic code.

Authors:  Jason W Chin
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

Review 9.  Recent advances in synthetic biosafety.

Authors:  Anna J Simon; Andrew D Ellington
Journal:  F1000Res       Date:  2016-08-31

Review 10.  Efforts and Challenges in Engineering the Genetic Code.

Authors:  Xiao Lin; Allen Chi Shing Yu; Ting Fung Chan
Journal:  Life (Basel)       Date:  2017-03-14
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