Literature DB >> 26738776

Creating an anthropomorphic digital MR phantom--an extensible tool for comparing and evaluating quantitative imaging algorithms.

Ryan J Bosca1, Edward F Jackson.   

Abstract

Assessing and mitigating the various sources of bias and variance associated with image quantification algorithms is essential to the use of such algorithms in clinical research and practice. Assessment is usually accomplished with grid-based digital reference objects (DRO) or, more recently, digital anthropomorphic phantoms based on normal human anatomy. Publicly available digital anthropomorphic phantoms can provide a basis for generating realistic model-based DROs that incorporate the heterogeneity commonly found in pathology. Using a publicly available vascular input function (VIF) and digital anthropomorphic phantom of a normal human brain, a methodology was developed to generate a DRO based on the general kinetic model (GKM) that represented realistic and heterogeneously enhancing pathology. GKM parameters were estimated from a deidentified clinical dynamic contrast-enhanced (DCE) MRI exam. This clinical imaging volume was co-registered with a discrete tissue model, and model parameters estimated from clinical images were used to synthesize a DCE-MRI exam that consisted of normal brain tissues and a heterogeneously enhancing brain tumor. An example application of spatial smoothing was used to illustrate potential applications in assessing quantitative imaging algorithms. A voxel-wise Bland-Altman analysis demonstrated negligible differences between the parameters estimated with and without spatial smoothing (using a small radius Gaussian kernel). In this work, we reported an extensible methodology for generating model-based anthropomorphic DROs containing normal and pathological tissue that can be used to assess quantitative imaging algorithms.

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Year:  2016        PMID: 26738776     DOI: 10.1088/0031-9155/61/2/974

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  10 in total

1.  Development of realistic multi-contrast textured XCAT (MT-XCAT) phantoms using a dual-discriminator conditional-generative adversarial network (D-CGAN).

Authors:  Yushi Chang; Kyle Lafata; William Paul Segars; Fang-Fang Yin; Lei Ren
Journal:  Phys Med Biol       Date:  2020-03-19       Impact factor: 3.609

2.  Joint arterial input function and tracer kinetic parameter estimation from undersampled dynamic contrast-enhanced MRI using a model consistency constraint.

Authors:  Yi Guo; Sajan Goud Lingala; Yannick Bliesener; R Marc Lebel; Yinghua Zhu; Krishna S Nayak
Journal:  Magn Reson Med       Date:  2017-09-14       Impact factor: 4.668

3.  Efficient DCE-MRI Parameter and Uncertainty Estimation Using a Neural Network.

Authors:  Yannick Bliesener; Jay Acharya; Krishna S Nayak
Journal:  IEEE Trans Med Imaging       Date:  2019-11-26       Impact factor: 10.048

4.  An in silico validation framework for quantitative DCE-MRI techniques based on a dynamic digital phantom.

Authors:  Chengyue Wu; David A Hormuth; Ty Easley; Victor Eijkhout; Federico Pineda; Gregory S Karczmar; Thomas E Yankeelov
Journal:  Med Image Anal       Date:  2021-07-20       Impact factor: 13.828

5.  An Anthropomorphic Digital Reference Object (DRO) for Simulation and Analysis of Breast DCE MRI Techniques.

Authors:  Leah Henze Bancroft; James Holmes; Ryan Bosca-Harasim; Jacob Johnson; Pingni Wang; Frank Korosec; Walter Block; Roberta Strigel
Journal:  Tomography       Date:  2022-04-02

6.  Dynamic contrast-enhanced MRI of the patellar bone: How to quantify perfusion.

Authors:  Dirk H J Poot; Rianne A van der Heijden; Marienke van Middelkoop; Edwin H G Oei; Stefan Klein
Journal:  J Magn Reson Imaging       Date:  2017-07-14       Impact factor: 4.813

7.  A Population-Based Digital Reference Object (DRO) for Optimizing Dynamic Susceptibility Contrast (DSC)-MRI Methods for Clinical Trials.

Authors:  Natenael B Semmineh; Ashley M Stokes; Laura C Bell; Jerrold L Boxerman; C Chad Quarles
Journal:  Tomography       Date:  2017-03

8.  Impact of (k,t) sampling on DCE MRI tracer kinetic parameter estimation in digital reference objects.

Authors:  Yannick Bliesener; Sajan G Lingala; Justin P Haldar; Krishna S Nayak
Journal:  Magn Reson Med       Date:  2019-10-12       Impact factor: 4.668

9.  A generative adversarial network (GAN)-based technique for synthesizing realistic respiratory motion in the extended cardiac-torso (XCAT) phantoms.

Authors:  Yushi Chang; Zhuoran Jiang; William Paul Segars; Zeyu Zhang; Kyle Lafata; Jing Cai; Fang-Fang Yin; Lei Ren
Journal:  Phys Med Biol       Date:  2021-05-31       Impact factor: 4.174

10.  Tracer kinetic models as temporal constraints during brain tumor DCE-MRI reconstruction.

Authors:  Sajan Goud Lingala; Yi Guo; Yannick Bliesener; Yinghua Zhu; R Marc Lebel; Meng Law; Krishna S Nayak
Journal:  Med Phys       Date:  2019-11-19       Impact factor: 4.071

  10 in total

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