Literature DB >> 26730398

Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

Md Mahmudur Rahman1, Sameer K Antani2, Dina Demner-Fushman2, George R Thoma2.   

Abstract

This article presents an approach to biomedical image retrieval by mapping image regions to local concepts where images are represented in a weighted entropy-based concept feature space. The term "concept" refers to perceptually distinguishable visual patches that are identified locally in image regions and can be mapped to a glossary of imaging terms. Further, the visual significance (e.g., visualness) of concepts is measured as the Shannon entropy of pixel values in image patches and is used to refine the feature vector. Moreover, the system can assist the user in interactively selecting a region-of-interest (ROI) and searching for similar image ROIs. Further, a spatial verification step is used as a postprocessing step to improve retrieval results based on location information. The hypothesis that such approaches would improve biomedical image retrieval is validated through experiments on two different data sets, which are collected from open access biomedical literature.

Entities:  

Keywords:  biomedical literature; content-based image retrieval; image concepts; interactive retrieval; medical image representation; region-based search

Year:  2015        PMID: 26730398      PMCID: PMC4695659          DOI: 10.1117/1.JMI.2.4.046502

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  15 in total

Review 1.  Lymphangioleiomyomatosis: pulmonary and abdominal findings with pathologic correlation.

Authors:  Esther Pallisa; Pilar Sanz; Antonio Roman; Joaquim Majó; Jordi Andreu; José Cáceres
Journal:  Radiographics       Date:  2002-10       Impact factor: 5.333

2.  A framework for medical image retrieval using machine learning and statistical similarity matching techniques with relevance feedback.

Authors:  Md Mahmudur Rahman; Prabir Bhattacharya; Bipin C Desai
Journal:  IEEE Trans Inf Technol Biomed       Date:  2007-01

3.  BioText Search Engine: beyond abstract search.

Authors:  Marti A Hearst; Anna Divoli; Harendra Guturu; Alex Ksikes; Preslav Nakov; Michael A Wooldridge; Jerry Ye
Journal:  Bioinformatics       Date:  2007-06-01       Impact factor: 6.937

4.  Fleischner Society: glossary of terms for thoracic imaging.

Authors:  David M Hansell; Alexander A Bankier; Heber MacMahon; Theresa C McLoud; Nestor L Müller; Jacques Remy
Journal:  Radiology       Date:  2008-01-14       Impact factor: 11.105

5.  Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Authors:  Songhua Xu; James McCusker; Michael Krauthammer
Journal:  Bioinformatics       Date:  2008-07-09       Impact factor: 6.937

6.  Towards the creation of a visual ontology of biomedical imaging entities.

Authors:  Matthew S Simpson; Daekeun You; Md Mahmudur Rahman; Sameer K Antani; George R Thoma; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

7.  Literature-based biomedical image classification and retrieval.

Authors:  Matthew S Simpson; Daekeun You; Md Mahmudur Rahman; Zhiyun Xue; Dina Demner-Fushman; Sameer Antani; George Thoma
Journal:  Comput Med Imaging Graph       Date:  2014-06-20       Impact factor: 4.790

Review 8.  Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013.

Authors:  Jayashree Kalpathy-Cramer; Alba García Seco de Herrera; Dina Demner-Fushman; Sameer Antani; Steven Bedrick; Henning Müller
Journal:  Comput Med Imaging Graph       Date:  2014-03-27       Impact factor: 4.790

9.  Annotation and retrieval of clinically relevant images.

Authors:  Dina Demner-Fushman; Sameer Antani; Matthew Simpson; George R Thoma
Journal:  Int J Med Inform       Date:  2009-07-09       Impact factor: 4.046

Review 10.  PubMed and beyond: a survey of web tools for searching biomedical literature.

Authors:  Zhiyong Lu
Journal:  Database (Oxford)       Date:  2011-01-18       Impact factor: 3.451

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