Literature DB >> 24746250

Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013.

Jayashree Kalpathy-Cramer1, Alba García Seco de Herrera2, Dina Demner-Fushman3, Sameer Antani3, Steven Bedrick4, Henning Müller2.   

Abstract

Medical image retrieval and classification have been extremely active research topics over the past 15 years. Within the ImageCLEF benchmark in medical image retrieval and classification, a standard test bed was created that allows researchers to compare their approaches and ideas on increasingly large and varied data sets including generated ground truth. This article describes the lessons learned in ten evaluation campaigns. A detailed analysis of the data also highlights the value of the resources created.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Biomedical literature; Content-based retrieval; Image retrieval; Multimodal medical retrieval; Text-based image retrieval

Mesh:

Year:  2014        PMID: 24746250      PMCID: PMC4177510          DOI: 10.1016/j.compmedimag.2014.03.004

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  11 in total

1.  Medical case retrieval from a committee of decision trees.

Authors:  Gwénolé Quellec; Mathieu Lamard; Lynda Bekri; Guy Cazuguel; Christian Roux; Béatrice Cochener
Journal:  IEEE Trans Inf Technol Biomed       Date:  2010-09

Review 2.  A survey of current work in biomedical text mining.

Authors:  Aaron M Cohen; William R Hersh
Journal:  Brief Bioinform       Date:  2005-03       Impact factor: 11.622

3.  Essie: a concept-based search engine for structured biomedical text.

Authors:  Nicholas C Ide; Russell F Loane; Dina Demner-Fushman
Journal:  J Am Med Inform Assoc       Date:  2007-02-28       Impact factor: 4.497

4.  GoldMiner: a radiology image search engine.

Authors:  Charles E Kahn; Cheng Thao
Journal:  AJR Am J Roentgenol       Date:  2007-06       Impact factor: 3.959

5.  Analyzing web log files of the health on the net HONmedia search engine to define typical image search tasks for image retrieval evaluation.

Authors:  Henning Müller; Célia Boyer; Arnaud Gaudinat; William Hersh; Antoine Geissbuhler
Journal:  Stud Health Technol Inform       Date:  2007

Review 6.  The ImageCLEFmed medical image retrieval task test collection.

Authors:  William Hersh; Henning Müller; Jayashree Kalpathy-Cramer
Journal:  J Digit Imaging       Date:  2008-09-03       Impact factor: 4.056

7.  Using medline queries to generate image retrieval tasks for benchmarking.

Authors:  Henning Müller; Jayashree Kalpathy-Cramer; William Hersh; Antoine Geissbuhler
Journal:  Stud Health Technol Inform       Date:  2008

8.  A survey on visual information search behavior and requirements of radiologists.

Authors:  D Markonis; M Holzer; S Dungs; A Vargas; G Langs; S Kriewel; H Müller
Journal:  Methods Inf Med       Date:  2012-08-31       Impact factor: 2.176

9.  Log analysis to understand medical professionals' image searching behaviour.

Authors:  Theodora Tsikrika; Henning Müller; Charles E Kahn
Journal:  Stud Health Technol Inform       Date:  2012

Review 10.  Health information systems - past, present, future.

Authors:  Reinhold Haux
Journal:  Int J Med Inform       Date:  2005-09-19       Impact factor: 4.046

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  13 in total

1.  Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

Authors:  Md Mahmudur Rahman; Sameer K Antani; Dina Demner-Fushman; George R Thoma
Journal:  J Med Imaging (Bellingham)       Date:  2015-12-30

2.  A novel fused convolutional neural network for biomedical image classification.

Authors:  Shuchao Pang; Anan Du; Mehmet A Orgun; Zhezhou Yu
Journal:  Med Biol Eng Comput       Date:  2018-07-12       Impact factor: 2.602

3.  Compound image segmentation of published biomedical figures.

Authors:  Pengyuan Li; Xiangying Jiang; Chandra Kambhamettu; Hagit Shatkay
Journal:  Bioinformatics       Date:  2018-04-01       Impact factor: 6.937

4.  Preparing a collection of radiology examinations for distribution and retrieval.

Authors:  Dina Demner-Fushman; Marc D Kohli; Marc B Rosenman; Sonya E Shooshan; Laritza Rodriguez; Sameer Antani; George R Thoma; Clement J McDonald
Journal:  J Am Med Inform Assoc       Date:  2015-07-01       Impact factor: 4.497

5.  Overview of the TREC 2017 Precision Medicine Track.

Authors:  Kirk Roberts; Dina Demner-Fushman; Ellen M Voorhees; William R Hersh; Steven Bedrick; Alexander J Lazar; Shubham Pant
Journal:  Text Retr Conf       Date:  2017-11

6.  Parallel multiple instance learning for extremely large histopathology image analysis.

Authors:  Yan Xu; Yeshu Li; Zhengyang Shen; Ziwei Wu; Teng Gao; Yubo Fan; Maode Lai; Eric I-Chao Chang
Journal:  BMC Bioinformatics       Date:  2017-08-03       Impact factor: 3.169

Review 7.  Searching for scientific evidence in a pandemic: An overview of TREC-COVID.

Authors:  Kirk Roberts; Tasmeer Alam; Steven Bedrick; Dina Demner-Fushman; Kyle Lo; Ian Soboroff; Ellen Voorhees; Lucy Lu Wang; William R Hersh
Journal:  J Biomed Inform       Date:  2021-07-08       Impact factor: 8.000

8.  A Hybrid Rao-NM Algorithm for Image Template Matching.

Authors:  Xinran Liu; Zhongju Wang; Long Wang; Chao Huang; Xiong Luo
Journal:  Entropy (Basel)       Date:  2021-05-27       Impact factor: 2.524

9.  Medical Image Retrieval: A Multimodal Approach.

Authors:  Yu Cao; Shawn Steffey; Jianbiao He; Degui Xiao; Cui Tao; Ping Chen; Henning Müller
Journal:  Cancer Inform       Date:  2015-07-22

10.  Brain MRI Pattern Recognition Translated to Clinical Scenarios.

Authors:  Andreia V Faria; Zifei Liang; Michael I Miller; Susumu Mori
Journal:  Front Neurosci       Date:  2017-10-20       Impact factor: 4.677

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