Literature DB >> 19546026

Annotation and retrieval of clinically relevant images.

Dina Demner-Fushman1, Sameer Antani, Matthew Simpson, George R Thoma.   

Abstract

PURPOSE: Medical images are a significant information source for clinical decision-making. Currently available information retrieval and decision support systems rely primarily on the text of scientific publications to find evidence in support of clinical information needs. The images and illustrations are available only within the full text of a scientific publication and do not directly contribute evidence to such systems. Our first goal is to explore whether image features facilitate finding relevant images that appear in publications. Our second goal is to find promising approaches for providing clinical evidence at the point of service, leveraging information contained in the text and images.
METHODS: We studied two approaches to finding illustrative evidence: a supervised machine-learning approach, in which images are classified as being relevant to an information need or not, and a pipeline information retrieval approach, in which images were retrieved using associated text and then re-ranked using content-based image retrieval (CBIR) techniques.
RESULTS: Our information retrieval approach did not benefit from combining textual and image information. However, given sufficient training data for the machine-learning approach, we achieved 56% average precision at 94% recall using textual features, and 27% average precision at 86% recall using image features. Combining these classifiers resulted in improvement up to 81% precision at 96% recall (74% recall at 85% precision, on average) for the requests with over 180 positive training examples.
CONCLUSIONS: Our supervised machine-learning methods that combine information from image and text are capable of achieving image annotation and retrieval accuracy acceptable for providing clinical evidence, given sufficient training data.

Entities:  

Mesh:

Year:  2009        PMID: 19546026      PMCID: PMC2783743          DOI: 10.1016/j.ijmedinf.2009.05.003

Source DB:  PubMed          Journal:  Int J Med Inform        ISSN: 1386-5056            Impact factor:   4.046


  7 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Advancing biomedical image retrieval: development and analysis of a test collection.

Authors:  William R Hersh; Henning Müller; Jeffery R Jensen; Jianji Yang; Paul N Gorman; Patrick Ruch
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

3.  GoldMiner: a radiology image search engine.

Authors:  Charles E Kahn; Cheng Thao
Journal:  AJR Am J Roentgenol       Date:  2007-06       Impact factor: 3.959

4.  Extraction of perceptually important colors and similarity measurement for image matching, retrieval and analysis.

Authors:  Aleksandra Mojsilovic; Jianying Hu; Emina Soljanin
Journal:  IEEE Trans Image Process       Date:  2002       Impact factor: 10.856

5.  MR colonography in patients with incomplete conventional colonoscopy.

Authors:  Waleed Ajaj; Thomas C Lauenstein; Gregor Pelster; Gerald Holtmann; Stefan G Ruehm; Joerg F Debatin; Susanne C Goehde
Journal:  Radiology       Date:  2004-12-10       Impact factor: 11.105

6.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

7.  Eosinophilic cellulitislike reaction to subcutaneous etanercept injection.

Authors:  Harry Winfield; Edward Lain; Thomas Horn; Jerri Hoskyn
Journal:  Arch Dermatol       Date:  2006-02
  7 in total
  10 in total

1.  Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

Authors:  Md Mahmudur Rahman; Sameer K Antani; Dina Demner-Fushman; George R Thoma
Journal:  J Med Imaging (Bellingham)       Date:  2015-12-30

2.  Can Big Data guide prognosis and clinical decisions in epilepsy?

Authors:  Xiaojin Li; Licong Cui; Guo-Qiang Zhang; Samden D Lhatoo
Journal:  Epilepsia       Date:  2021-02-02       Impact factor: 5.864

3.  Generate Structured Radiology Report from CT Images Using Image Annotation Techniques: Preliminary Results with Liver CT.

Authors:  Samira Loveymi; Mir Hossein Dezfoulian; Muharram Mansoorizadeh
Journal:  J Digit Imaging       Date:  2020-04       Impact factor: 4.056

4.  An image feature-based approach to automatically find images for application to clinical decision support.

Authors:  R Joe Stanley; Soumya De; Dina Demner-Fushman; Sameer Antani; George R Thoma
Journal:  Comput Med Imaging Graph       Date:  2010-12-08       Impact factor: 4.790

5.  Automatic figure ranking and user interfacing for intelligent figure search.

Authors:  Hong Yu; Feifan Liu; Balaji Polepalli Ramesh
Journal:  PLoS One       Date:  2010-10-07       Impact factor: 3.240

6.  On combining image-based and ontological semantic dissimilarities for medical image retrieval applications.

Authors:  Camille Kurtz; Adrien Depeursinge; Sandy Napel; Christopher F Beaulieu; Daniel L Rubin
Journal:  Med Image Anal       Date:  2014-07-02       Impact factor: 8.545

7.  Learning to rank figures within a biomedical article.

Authors:  Feifan Liu; Hong Yu
Journal:  PLoS One       Date:  2014-03-13       Impact factor: 3.240

8.  A framework for biomedical figure segmentation towards image-based document retrieval.

Authors:  Luis D Lopez; Jingyi Yu; Cecilia Arighi; Catalina O Tudor; Manabu Torii; Hongzhan Huang; K Vijay-Shanker; Cathy Wu
Journal:  BMC Syst Biol       Date:  2013-10-23

9.  Figure-associated text summarization and evaluation.

Authors:  Balaji Polepalli Ramesh; Ricky J Sethi; Hong Yu
Journal:  PLoS One       Date:  2015-02-02       Impact factor: 3.240

Review 10.  Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

Authors:  Zeeshan Ahmed; Saman Zeeshan; Thomas Dandekar
Journal:  Database (Oxford)       Date:  2016-08-18       Impact factor: 3.451

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.