Literature DB >> 23304361

Towards the creation of a visual ontology of biomedical imaging entities.

Matthew S Simpson1, Daekeun You, Md Mahmudur Rahman, Sameer K Antani, George R Thoma, Dina Demner-Fushman.   

Abstract

Image content is frequently the target of biomedical information extraction systems. However, the meaning of this content cannot be easily understood without some associated text. In order to improve the integration of textual and visual information, we are developing a visual ontology for biomedical image retrieval. Our visual ontology maps the appearance of image regions to concepts in an existing textual ontology, thereby inheriting relationships among the visual entities. Such a resource creates a bridge between the visual characteristics of important image regions and their semantic interpretation. We automatically populate our visual ontology by pairing image regions with their associated descriptions. To demonstrate the usefulness of this resource, we have developed a classification method that automatically labels image regions with appropriate concepts based solely on their appearance. Our results for thoracic imaging terms show that our methods are promising first steps towards the creation of a biomedical visual ontology.

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Year:  2012        PMID: 23304361      PMCID: PMC3540530     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  11 in total

1.  High-resolution CT quantification of bronchiectasis: clinical and functional correlation.

Authors:  Gaik C Ooi; Pek L Khong; Moira Chan-Yeung; James C M Ho; Philip K S Chan; Jeriel C K Lee; Wah K Lam; Kenneth W T Tsang
Journal:  Radiology       Date:  2002-12       Impact factor: 11.105

2.  Fusing visual and clinical information for lung tissue classification in high-resolution computed tomography.

Authors:  Adrien Depeursinge; Daniel Racoceanu; Jimison Iavindrasana; Gilles Cohen; Alexandra Platon; Pierre-Alexandre Poletti; Henning Müller
Journal:  Artif Intell Med       Date:  2010-05-23       Impact factor: 5.326

3.  Advancing biomedical image retrieval: development and analysis of a test collection.

Authors:  William R Hersh; Henning Müller; Jeffery R Jensen; Jianji Yang; Paul N Gorman; Patrick Ruch
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

4.  RadLex: a new method for indexing online educational materials.

Authors:  Curtis P Langlotz
Journal:  Radiographics       Date:  2006 Nov-Dec       Impact factor: 5.333

5.  Essie: a concept-based search engine for structured biomedical text.

Authors:  Nicholas C Ide; Russell F Loane; Dina Demner-Fushman
Journal:  J Am Med Inform Assoc       Date:  2007-02-28       Impact factor: 4.497

6.  Fleischner Society: glossary of terms for thoracic imaging.

Authors:  David M Hansell; Alexander A Bankier; Heber MacMahon; Theresa C McLoud; Nestor L Müller; Jacques Remy
Journal:  Radiology       Date:  2008-01-14       Impact factor: 11.105

7.  Comparative performance analysis of state-of-the-art classification algorithms applied to lung tissue categorization.

Authors:  Adrien Depeursinge; Jimison Iavindrasana; Asmâa Hidki; Gilles Cohen; Antoine Geissbuhler; Alexandra Platon; Pierre-Alexandre Poletti; Henning Müller
Journal:  J Digit Imaging       Date:  2008-11-04       Impact factor: 4.056

8.  2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.

Authors:  Özlem Uzuner; Brett R South; Shuying Shen; Scott L DuVall
Journal:  J Am Med Inform Assoc       Date:  2011-06-16       Impact factor: 4.497

9.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

10.  Are figure legends sufficient? Evaluating the contribution of associated text to biomedical figure comprehension.

Authors:  Hong Yu; Shashank Agarwal; Mark Johnston; Aaron Cohen
Journal:  J Biomed Discov Collab       Date:  2009-01-06
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  3 in total

1.  Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

Authors:  Md Mahmudur Rahman; Sameer K Antani; Dina Demner-Fushman; George R Thoma
Journal:  J Med Imaging (Bellingham)       Date:  2015-12-30

2.  Ontology-guided organ detection to retrieve web images of disease manifestation: towards the construction of a consumer-based health image library.

Authors:  Yang Chen; Xiaofeng Ren; Guo-Qiang Zhang; Rong Xu
Journal:  J Am Med Inform Assoc       Date:  2013-06-21       Impact factor: 4.497

3.  Medical Image Retrieval: A Multimodal Approach.

Authors:  Yu Cao; Shawn Steffey; Jianbiao He; Degui Xiao; Cui Tao; Ping Chen; Henning Müller
Journal:  Cancer Inform       Date:  2015-07-22
  3 in total

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