Literature DB >> 26713202

Wide-field fluorescence molecular tomography with compressive sensing based preconditioning.

Ruoyang Yao1, Qi Pian1, Xavier Intes1.   

Abstract

Wide-field optical tomography based on structured light illumination and detection strategies enables efficient tomographic imaging of large tissues at very fast acquisition speeds. However, the optical inverse problem based on such instrumental approach is still ill-conditioned. Herein, we investigate the benefit of employing compressive sensing-based preconditioning to wide-field structured illumination and detection approaches. We assess the performances of Fluorescence Molecular Tomography (FMT) when using such preconditioning methods both in silico and with experimental data. Additionally, we demonstrate that such methodology could be used to select the subset of patterns that provides optimal reconstruction performances. Lastly, we compare preconditioning data collected using a normal base that offers good experimental SNR against that directly acquired with optimal designed base. An experimental phantom study is provided to validate the proposed technique.

Keywords:  (070.6120) Spatial light modulators; (110.4234) Multispectral and hyperspectral imaging; (170.3010) Image reconstruction techniques; (170.6920) Time-resolved imaging; (170.6960) Tomography

Year:  2015        PMID: 26713202      PMCID: PMC4679262          DOI: 10.1364/BOE.6.004887

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  20 in total

1.  A virtual source pattern method for fluorescence tomography with structured light.

Authors:  Nicolas Ducros; Cosimo D'Andrea; Andrea Bassi; Gianluca Valentini; Simon Arridge
Journal:  Phys Med Biol       Date:  2012-05-29       Impact factor: 3.609

2.  Fluorescence molecular tomography reconstruction via discrete cosine transform-based regularization.

Authors:  Junwei Shi; Fei Liu; Jiulou Zhang; Jianwen Luo; Jing Bai
Journal:  J Biomed Opt       Date:  2015-05       Impact factor: 3.170

3.  Mesh-based Monte Carlo method in time-domain widefield fluorescence molecular tomography.

Authors:  Jin Chen; Qianqian Fang; Xavier Intes
Journal:  J Biomed Opt       Date:  2012-10       Impact factor: 3.170

4.  Fluorescence molecular tomography of an animal model using structured light rotating view acquisition.

Authors:  Nicolas Ducros; Andrea Bassi; Gianluca Valentini; Gianfranco Canti; Simon Arridge; Cosimo D'Andrea
Journal:  J Biomed Opt       Date:  2013-02       Impact factor: 3.170

5.  Illumination pattern optimization for fluorescence tomography: theory and simulation studies.

Authors:  Joyita Dutta; Sangtae Ahn; Anand A Joshi; Richard M Leahy
Journal:  Phys Med Biol       Date:  2010-04-30       Impact factor: 3.609

6.  Light illumination and detection patterns for fluorescence diffuse optical tomography based on compressive sensing.

Authors:  An Jin; Birsen Yazici; Vasilis Ntziachristos
Journal:  IEEE Trans Image Process       Date:  2014-06       Impact factor: 10.856

7.  High-resolution mesoscopic fluorescence molecular tomography based on compressive sensing.

Authors:  Fugang Yang; Mehmet S Ozturk; Lingling Zhao; Wenxiang Cong; Ge Wang; Xavier Intes
Journal:  IEEE Trans Biomed Eng       Date:  2014-08-15       Impact factor: 4.538

8.  Improvement of image quality of time-domain diffuse optical tomography with l sparsity regularization.

Authors:  Shinpei Okawa; Yoko Hoshi; Yukio Yamada
Journal:  Biomed Opt Express       Date:  2011-11-21       Impact factor: 3.732

9.  Quantitative tomographic imaging of intermolecular FRET in small animals.

Authors:  Vivek Venugopal; Jin Chen; Margarida Barroso; Xavier Intes
Journal:  Biomed Opt Express       Date:  2012-11-08       Impact factor: 3.732

10.  Non-invasive in vivo imaging of near infrared-labeled transferrin in breast cancer cells and tumors using fluorescence lifetime FRET.

Authors:  Ken Abe; Lingling Zhao; Ammasi Periasamy; Xavier Intes; Margarida Barroso
Journal:  PLoS One       Date:  2013-11-21       Impact factor: 3.240

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  9 in total

1.  Generalized mesh-based Monte Carlo for wide-field illumination and detection via mesh retessellation.

Authors:  Ruoyang Yao; Xavier Intes; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2015-12-18       Impact factor: 3.732

2.  Direct approach to compute Jacobians for diffuse optical tomography using perturbation Monte Carlo-based photon "replay".

Authors:  Ruoyang Yao; Xavier Intes; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2018-09-04       Impact factor: 3.732

3.  Image reconstruction in fluorescence molecular tomography with sparsity-initialized maximum-likelihood expectation maximization.

Authors:  Yansong Zhu; Abhinav K Jha; Dean F Wong; Arman Rahmim
Journal:  Biomed Opt Express       Date:  2018-06-13       Impact factor: 3.732

4.  Improving mesoscopic fluorescence molecular tomography via preconditioning and regularization.

Authors:  Fugang Yang; Ruoyang Yao; Mehmet Ozturk; Denzel Faulkner; Qinglan Qu; Xavier Intes
Journal:  Biomed Opt Express       Date:  2018-05-23       Impact factor: 3.732

5.  Improving mesoscopic fluorescence molecular tomography through data reduction.

Authors:  Fugang Yang; Mehmet S Ozturk; Ruoyang Yao; Xavier Intes
Journal:  Biomed Opt Express       Date:  2017-07-28       Impact factor: 3.732

6.  System configuration optimization for mesoscopic fluorescence molecular tomography.

Authors:  Fugang Yang; Denzel Faulkner; Ruoyang Yao; Mehmet S Ozturk; Qinglan Qu; Xavier Intes
Journal:  Biomed Opt Express       Date:  2019-10-11       Impact factor: 3.732

7.  Comparison of illumination geometry for lifetime-based measurements in whole-body preclinical imaging.

Authors:  Nattawut Sinsuebphon; Alena Rudkouskaya; Margarida Barroso; Xavier Intes
Journal:  J Biophotonics       Date:  2018-06-28       Impact factor: 3.207

Review 8.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20

Review 9.  Deep learning in macroscopic diffuse optical imaging.

Authors:  Jason T Smith; Marien Ochoa; Denzel Faulkner; Grant Haskins; Xavier Intes
Journal:  J Biomed Opt       Date:  2022-02       Impact factor: 3.758

  9 in total

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