Literature DB >> 26689789

Photo-lysine captures proteins that bind lysine post-translational modifications.

Tangpo Yang1, Xiao-Meng Li1, Xiucong Bao1, Yi Man Eva Fung1, Xiang David Li1.   

Abstract

Post-translational modifications (PTMs) have key roles in regulating protein-protein interactions in living cells. However, it remains a challenge to identify these PTM-mediated interactions. Here we develop a new lysine-based photo-reactive amino acid, termed photo-lysine. We demonstrate that photo-lysine, which is readily incorporated into proteins by native mammalian translation machinery, can be used to capture and identify proteins that recognize lysine PTMs, including 'readers' and 'erasers' of histone modifications.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26689789     DOI: 10.1038/nchembio.1990

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  24 in total

1.  Set9, a novel histone H3 methyltransferase that facilitates transcription by precluding histone tail modifications required for heterochromatin formation.

Authors:  Kenichi Nishioka; Sergei Chuikov; Kavitha Sarma; Hediye Erdjument-Bromage; C David Allis; Paul Tempst; Danny Reinberg
Journal:  Genes Dev       Date:  2002-02-15       Impact factor: 11.361

2.  Comparative analysis of cleavable azobenzene-based affinity tags for bioorthogonal chemical proteomics.

Authors:  Yu-Ying Yang; Markus Grammel; Anuradha S Raghavan; Guillaume Charron; Howard C Hang
Journal:  Chem Biol       Date:  2010-11-24

3.  Extraction, purification and analysis of histones.

Authors:  David Shechter; Holger L Dormann; C David Allis; Sandra B Hake
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

4.  A genetically encoded diazirine photocrosslinker in Escherichia coli.

Authors:  Eric M Tippmann; Wenshe Liu; Daniel Summerer; Antha V Mack; Peter G Schultz
Journal:  Chembiochem       Date:  2007-12-17       Impact factor: 3.164

Review 5.  The Hsp70 and Hsp60 chaperone machines.

Authors:  B Bukau; A L Horwich
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

6.  AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation.

Authors:  Yuanyuan Li; Hong Wen; Yuanxin Xi; Kaori Tanaka; Haibo Wang; Danni Peng; Yongfeng Ren; Qihuang Jin; Sharon Y R Dent; Wei Li; Haitao Li; Xiaobing Shi
Journal:  Cell       Date:  2014-10-23       Impact factor: 41.582

7.  Evidence for a common mechanism of SIRT1 regulation by allosteric activators.

Authors:  Basil P Hubbard; Ana P Gomes; Han Dai; Jun Li; April W Case; Thomas Considine; Thomas V Riera; Jessica E Lee; Sook Yen E; Dudley W Lamming; Bradley L Pentelute; Eli R Schuman; Linda A Stevens; Alvin J Y Ling; Sean M Armour; Shaday Michan; Huizhen Zhao; Yong Jiang; Sharon M Sweitzer; Charles A Blum; Jeremy S Disch; Pui Yee Ng; Konrad T Howitz; Anabela P Rolo; Yoshitomo Hamuro; Joel Moss; Robert B Perni; James L Ellis; George P Vlasuk; David A Sinclair
Journal:  Science       Date:  2013-03-08       Impact factor: 47.728

8.  Mechanism of dimer formation of the 90-kDa heat-shock protein.

Authors:  T Nemoto; Y Ohara-Nemoto; M Ota; T Takagi; K Yokoyama
Journal:  Eur J Biochem       Date:  1995-10-01

9.  Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase.

Authors:  Jintang Du; Yeyun Zhou; Xiaoyang Su; Jiu Jiu Yu; Saba Khan; Hong Jiang; Jungwoo Kim; Jimin Woo; Jun Huyn Kim; Brian Hyun Choi; Bin He; Wei Chen; Sheng Zhang; Richard A Cerione; Johan Auwerx; Quan Hao; Hening Lin
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

10.  Identification of 'erasers' for lysine crotonylated histone marks using a chemical proteomics approach.

Authors:  Xiucong Bao; Yi Wang; Xin Li; Xiao-Meng Li; Zheng Liu; Tangpo Yang; Chi Fat Wong; Jiangwen Zhang; Quan Hao; Xiang David Li
Journal:  Elife       Date:  2014-11-04       Impact factor: 8.140

View more
  19 in total

1.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

2.  Photodissociative Cross-Linking of Non-covalent Peptide-Peptide Ion Complexes in the Gas Phase.

Authors:  Huong T H Nguyen; Prokopis C Andrikopoulos; Lubomír Rulíšek; Christopher J Shaffer; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2018-05-07       Impact factor: 3.109

Review 3.  Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.

Authors:  Xinmiao Fu; Zengyi Chang
Journal:  Protein Sci       Date:  2019-05-10       Impact factor: 6.725

4.  Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology.

Authors:  Shuai Zhao; Mo Yang; Wenfei Zhou; Baichao Zhang; Zhiqiang Cheng; Jiaxin Huang; Min Zhang; Zhiyou Wang; Rui Wang; Zhonglei Chen; Jinsong Zhu; Haitao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

5.  Xanthopsin-Like Systems via Site-Specific Click-Functionalization of a Retinoic Acid Binding Protein.

Authors:  Giusy Tassone; Marco Paolino; Cecilia Pozzi; Annalisa Reale; Laura Salvini; Gianluca Giorgi; Maurizio Orlandini; Federico Galvagni; Stefano Mangani; Xuchun Yang; Benedetta Carlotti; Fausto Ortica; Loredana Latterini; Massimo Olivucci; Andrea Cappelli
Journal:  Chembiochem       Date:  2021-11-05       Impact factor: 3.164

6.  A Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains.

Authors:  Joshua J Rosnow; Sungmin Hwang; Bryan J Killinger; Young-Mo Kim; Ronald J Moore; Stephen R Lindemann; Julie A Maupin-Furlow; Aaron T Wright
Journal:  Appl Environ Microbiol       Date:  2018-08-31       Impact factor: 4.792

7.  A Chemical Proteomics Approach to Reveal Direct Protein-Protein Interactions in Living Cells.

Authors:  Ralph E Kleiner; Lisa E Hang; Kelly R Molloy; Brian T Chait; Tarun M Kapoor
Journal:  Cell Chem Biol       Date:  2017-11-05       Impact factor: 8.116

Review 8.  Photolytic Labeling and Its Applications in Protein Drug Discovery and Development.

Authors:  Yuan Chen; Elizabeth M Topp
Journal:  J Pharm Sci       Date:  2018-10-16       Impact factor: 3.534

9.  Meeting Proceedings ICBS2016-Translating the Power of Chemical Biology to Clinical Advances.

Authors:  Yugo Kuriki; Toru Komatsu; Peter D Ycas; Sara K Coulup; Erick J Carlson; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2017-03-17       Impact factor: 5.100

Review 10.  Recent advances in activity-based probes (ABPs) and affinity-based probes (AfBPs) for profiling of enzymes.

Authors:  Haixiao Fang; Bo Peng; Sing Yee Ong; Qiong Wu; Lin Li; Shao Q Yao
Journal:  Chem Sci       Date:  2021-05-18       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.