Literature DB >> 26664818

Polygenic Scores in Epidemiology: Risk Prediction, Etiology, and Clinical Utility.

Brion S Maher1.   

Abstract

Genes account for a significant proportion of the risk for most common diseases. The genome-wide association scan (GWAS) era of genetic epidemiology has generated a massive amount of data, revolutionized our thinking on the genetic architecture of common diseases and positioned the field to realistically consider risk prediction for common polygenic diseases, such as non-familial cancers, and autoimmune, cardiovascular and psychiatric diseases. Polygenic scoring is an approach that shows promise for understanding the polygenic contribution to common human diseases. This is an approach typically relying on genome-wide SNP data, where a set of SNPs identified in a discovery GWAS are used to construct composite polygenic scores. These scores are then used in additional samples for association testing or risk prediction. This review summarizes the extant literature on the use, power, and accuracy of polygenic scores in studies of the etiology of disease and the promise for disease risk prediction.

Entities:  

Keywords:  GWAS; Genetic Risk; Polygenic; Polygenic Risk; Polygenic Scores

Year:  2015        PMID: 26664818      PMCID: PMC4671512          DOI: 10.1007/s40471-015-0055-3

Source DB:  PubMed          Journal:  Curr Epidemiol Rep


  36 in total

1.  Genomic control for association studies.

Authors:  B Devlin; K Roeder
Journal:  Biometrics       Date:  1999-12       Impact factor: 2.571

2.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

Review 3.  Beyond odds ratios--communicating disease risk based on genetic profiles.

Authors:  Peter Kraft; Sholom Wacholder; Marilyn C Cornelis; Frank B Hu; Richard B Hayes; Gilles Thomas; Robert Hoover; David J Hunter; Stephen Chanock
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

4.  Personal genomes: The case of the missing heritability.

Authors:  Brendan Maher
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

5.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

6.  Genome partitioning of genetic variation for complex traits using common SNPs.

Authors:  Jian Yang; Teri A Manolio; Louis R Pasquale; Eric Boerwinkle; Neil Caporaso; Julie M Cunningham; Mariza de Andrade; Bjarke Feenstra; Eleanor Feingold; M Geoffrey Hayes; William G Hill; Maria Teresa Landi; Alvaro Alonso; Guillaume Lettre; Peng Lin; Hua Ling; William Lowe; Rasika A Mathias; Mads Melbye; Elizabeth Pugh; Marilyn C Cornelis; Bruce S Weir; Michael E Goddard; Peter M Visscher
Journal:  Nat Genet       Date:  2011-05-08       Impact factor: 38.330

7.  The genetic interpretation of area under the ROC curve in genomic profiling.

Authors:  Naomi R Wray; Jian Yang; Michael E Goddard; Peter M Visscher
Journal:  PLoS Genet       Date:  2010-02-26       Impact factor: 5.917

Review 8.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

9.  Polygenic risk of Parkinson disease is correlated with disease age at onset.

Authors:  Valentina Escott-Price; Mike A Nalls; Huw R Morris; Steven Lubbe; Alexis Brice; Thomas Gasser; Peter Heutink; Nicholas W Wood; John Hardy; Andrew B Singleton; Nigel M Williams
Journal:  Ann Neurol       Date:  2015-03-13       Impact factor: 10.422

10.  High loading of polygenic risk for ADHD in children with comorbid aggression.

Authors:  Marian L Hamshere; Kate Langley; Joanna Martin; Sharifah Shameem Agha; Evangelia Stergiakouli; Richard J L Anney; Jan Buitelaar; Stephen V Faraone; Klaus-Peter Lesch; Benjamin M Neale; Barbara Franke; Edmund Sonuga-Barke; Philip Asherson; Andrew Merwood; Jonna Kuntsi; Sarah E Medland; Stephan Ripke; Hans-Christoph Steinhausen; Christine Freitag; Andreas Reif; Tobias J Renner; Marcel Romanos; Jasmin Romanos; Andreas Warnke; Jobst Meyer; Haukur Palmason; Alejandro Arias Vasquez; Nanda Lambregts-Rommelse; Herbert Roeyers; Joseph Biederman; Alysa E Doyle; Hakon Hakonarson; Aribert Rothenberger; Tobias Banaschewski; Robert D Oades; James J McGough; Lindsey Kent; Nigel Williams; Michael J Owen; Peter Holmans; Michael C O'Donovan; Anita Thapar
Journal:  Am J Psychiatry       Date:  2013-08       Impact factor: 18.112

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  26 in total

1.  Critical Issues in the Inclusion of Genetic and Epigenetic Information in Prevention and Intervention Trials.

Authors:  Shawn J Latendresse; Rashelle Musci; Brion S Maher
Journal:  Prev Sci       Date:  2018-01

2.  Incorporating Functional Genomic Information to Enhance Polygenic Signal and Identify Variants Involved in Gene-by-Environment Interaction for Young Adult Alcohol Problems.

Authors:  Jessica E Salvatore; Jeanne E Savage; Peter Barr; Aaron R Wolen; Fazil Aliev; Eero Vuoksimaa; Antti Latvala; Lea Pulkkinen; Richard J Rose; Jaakko Kaprio; Danielle M Dick
Journal:  Alcohol Clin Exp Res       Date:  2017-12-19       Impact factor: 3.455

3.  Evaluating the genetic susceptibility to peer reported bullying behaviors.

Authors:  Rashelle J Musci; Amie F Bettencourt; Danielle Sisto; Brion Maher; George Uhl; Nicholas Ialongo; Catherine P Bradshaw
Journal:  Psychiatry Res       Date:  2018-03-15       Impact factor: 3.222

4.  Polygenic Score × Intervention Moderation: an Application of Discrete-Time Survival Analysis to Model the Timing of First Marijuana Use Among Urban Youth.

Authors:  Rashelle J Musci; Brian Fairman; Katherine E Masyn; George Uhl; Brion Maher; Danielle Y Sisto; Sheppard G Kellam; Nicholas S Ialongo
Journal:  Prev Sci       Date:  2018-01

5.  School Context in Adolescence and Cognitive Functioning 50 Years Later.

Authors:  Sara M Moorman; Emily A Greenfield; Sarah Garcia
Journal:  J Health Soc Behav       Date:  2019-12

Review 6.  Genome-wide association studies and polygenic risk scores for skin cancer: clinically useful yet?

Authors:  M R Roberts; M M Asgari; A E Toland
Journal:  Br J Dermatol       Date:  2019-07-07       Impact factor: 9.302

7.  Association between the polygenic liabilities for prostate cancer and breast cancer with biochemical recurrence after radical prostatectomy for localized prostate cancer.

Authors:  Shi-Heng Wang; Shu-Pin Huang; Yi-Jiun Pan; Po-Chang Hsiao; Chia-Yang Li; Lih-Chyang Chen; Chia-Cheng Yu; Chao-Yuan Huang; Victor C Lin; Te-Ling Lu; Bo-Ying Bao
Journal:  Am J Cancer Res       Date:  2021-05-15       Impact factor: 6.166

Review 8.  Recent Advances in the Genetics of Schizophrenia.

Authors:  Dimitrios Avramopoulos
Journal:  Mol Neuropsychiatry       Date:  2018-05-30

9.  Polygenic Determinants for Subsequent Breast Cancer Risk in Survivors of Childhood Cancer: The St Jude Lifetime Cohort Study (SJLIFE).

Authors:  Zhaoming Wang; Jinghui Zhang; Yutaka Yasui; Leslie L Robison; Qi Liu; Carmen L Wilson; John Easton; Heather Mulder; Ti-Cheng Chang; Michael C Rusch; Michael N Edmonson; Stephen V Rice; Matthew J Ehrhardt; Rebecca M Howell; Chimene A Kesserwan; Gang Wu; Kim E Nichols; James R Downing; Melissa M Hudson
Journal:  Clin Cancer Res       Date:  2018-10-26       Impact factor: 12.531

10.  Polygenic and environmental influences on the course of African Americans' alcohol use from early adolescence through young adulthood.

Authors:  Jill A Rabinowitz; Rashelle J Musci; Beth Reboussin; Adam J Milam; Kelly S Benke; George R Uhl; Danielle Y Sisto; Nicholas S Ialongo; Brion S Maher
Journal:  Dev Psychopathol       Date:  2020-05
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