Literature DB >> 26647183

Directed and persistent movement arises from mechanochemistry of the ParA/ParB system.

Longhua Hu1, Anthony G Vecchiarelli2, Kiyoshi Mizuuchi2, Keir C Neuman1, Jian Liu3.   

Abstract

The segregation of DNA before cell division is essential for faithful genetic inheritance. In many bacteria, segregation of low-copy number plasmids involves an active partition system composed of a nonspecific DNA-binding ATPase, ParA, and its stimulator protein ParB. The ParA/ParB system drives directed and persistent movement of DNA cargo both in vivo and in vitro. Filament-based models akin to actin/microtubule-driven motility were proposed for plasmid segregation mediated by ParA. Recent experiments challenge this view and suggest that ParA/ParB system motility is driven by a diffusion ratchet mechanism in which ParB-coated plasmid both creates and follows a ParA gradient on the nucleoid surface. However, the detailed mechanism of ParA/ParB-mediated directed and persistent movement remains unknown. Here, we develop a theoretical model describing ParA/ParB-mediated motility. We show that the ParA/ParB system can work as a Brownian ratchet, which effectively couples the ATPase-dependent cycling of ParA-nucleoid affinity to the motion of the ParB-bound cargo. Paradoxically, this resulting processive motion relies on quenching diffusive plasmid motion through a large number of transient ParA/ParB-mediated tethers to the nucleoid surface. Our work thus sheds light on an emergent phenomenon in which nonmotor proteins work collectively via mechanochemical coupling to propel cargos-an ingenious solution shaped by evolution to cope with the lack of processive motor proteins in bacteria.

Entities:  

Keywords:  Brownian ratchet; ParA ATPase; motility; theoretical model

Mesh:

Substances:

Year:  2015        PMID: 26647183      PMCID: PMC4697391          DOI: 10.1073/pnas.1505147112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

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Authors:  C Bustamante; S B Smith; J Liphardt; D Smith
Journal:  Curr Opin Struct Biol       Date:  2000-06       Impact factor: 6.809

Review 2.  Plasmid and chromosome traffic control: how ParA and ParB drive partition.

Authors:  Jennifer A Surtees; Barbara E Funnell
Journal:  Curr Top Dev Biol       Date:  2003       Impact factor: 4.897

3.  Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness.

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Journal:  Protein Sci       Date:  2004-05-07       Impact factor: 6.725

4.  Bacterial chromosome segregation: structure and DNA binding of the Soj dimer--a conserved biological switch.

Authors:  Thomas A Leonard; P Jonathan Butler; Jan Löwe
Journal:  EMBO J       Date:  2005-01-06       Impact factor: 11.598

5.  A driving and coupling "Pac-Man" mechanism for chromosome poleward translocation in anaphase A.

Authors:  Jian Liu; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-27       Impact factor: 11.205

6.  The Dam1 kinetochore ring complex moves processively on depolymerizing microtubule ends.

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7.  Powering a burnt bridges Brownian ratchet: a model for an extracellular motor driven by proteolysis of collagen.

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-10

8.  Reconstitution of DNA segregation driven by assembly of a prokaryotic actin homolog.

Authors:  Ethan C Garner; Christopher S Campbell; Douglas B Weibel; R Dyche Mullins
Journal:  Science       Date:  2007-03-02       Impact factor: 47.728

9.  Prokaryotic DNA segregation by an actin-like filament.

Authors:  Jakob Møller-Jensen; Rasmus Bugge Jensen; Jan Löwe; Kenn Gerdes
Journal:  EMBO J       Date:  2002-06-17       Impact factor: 11.598

10.  The bacterial chromosome segregation protein Spo0J spreads along DNA from parS nucleation sites.

Authors:  Heath Murray; Henrique Ferreira; Jeff Errington
Journal:  Mol Microbiol       Date:  2006-09       Impact factor: 3.501

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  26 in total

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Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2019-04-01       Impact factor: 2.129

2.  DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos.

Authors:  Ivan V Surovtsev; Manuel Campos; Christine Jacobs-Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

Review 3.  A few of our favorite things: Pairing, the bouquet, crossover interference and evolution of meiosis.

Authors:  Denise Zickler; Nancy Kleckner
Journal:  Semin Cell Dev Biol       Date:  2016-02-27       Impact factor: 7.727

4.  Nonspecific DNA binding by P1 ParA determines the distribution of plasmid partition and repressor activities.

Authors:  Jamie C Baxter; William G Waples; Barbara E Funnell
Journal:  J Biol Chem       Date:  2020-10-14       Impact factor: 5.157

Review 5.  Nucleoid-mediated positioning and transport in bacteria.

Authors:  Jessica R Kisner; Nathan J Kuwada
Journal:  Curr Genet       Date:  2019-11-05       Impact factor: 3.886

Review 6.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

Review 7.  Brownian ratchet mechanisms of ParA-mediated partitioning.

Authors:  Longhua Hu; Anthony G Vecchiarelli; Kiyoshi Mizuuchi; Keir C Neuman; Jian Liu
Journal:  Plasmid       Date:  2017-05-18       Impact factor: 3.466

8.  Protein gradients on the nucleoid position the carbon-fixing organelles of cyanobacteria.

Authors:  Joshua S MacCready; Pusparanee Hakim; Eric J Young; Longhua Hu; Jian Liu; Katherine W Osteryoung; Anthony G Vecchiarelli; Daniel C Ducat
Journal:  Elife       Date:  2018-12-06       Impact factor: 8.140

9.  The Slow Mobility of the ParA Partitioning Protein Underlies Its Steady-State Patterning in Caulobacter.

Authors:  Ivan V Surovtsev; Hoong Chuin Lim; Christine Jacobs-Wagner
Journal:  Biophys J       Date:  2016-06-21       Impact factor: 4.033

10.  Self-organised segregation of bacterial chromosomal origins.

Authors:  Andreas Hofmann; Jarno Mäkelä; David J Sherratt; Dieter Heermann; Seán M Murray
Journal:  Elife       Date:  2019-08-09       Impact factor: 8.140

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