Literature DB >> 16711838

Powering a burnt bridges Brownian ratchet: a model for an extracellular motor driven by proteolysis of collagen.

Saveez Saffarian1, Hong Qian, Ivan Collier, Elliot Elson, Gregory Goldberg.   

Abstract

Biased diffusion of collagenase on collagen fibrils may represent the first observed adenosine triphosphate-independent extracellular molecular motor. The magnitude of force generated by the enzyme remains unclear. We propose a propulsion mechanism based on a burnt bridges Brownian ratchet model with a varying degree of coupling of the free energy from collagen proteolysis to the enzyme motion. When constrained by experimental observations, our model predicts 0.1 pN stall force for individual collagenase molecules. A dimer, surprisingly, can generate a force in the range of 5 pN, suggesting that the motor can be of biological significance.

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Year:  2006        PMID: 16711838     DOI: 10.1103/PhysRevE.73.041909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  Directed and persistent movement arises from mechanochemistry of the ParA/ParB system.

Authors:  Longhua Hu; Anthony G Vecchiarelli; Kiyoshi Mizuuchi; Keir C Neuman; Jian Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-08       Impact factor: 11.205

2.  In search of an optimal ring to couple microtubule depolymerization to processive chromosome motions.

Authors:  Artem Efremov; Ekaterina L Grishchuk; J Richard McIntosh; Fazly I Ataullakhanov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-20       Impact factor: 11.205

3.  Molecular spiders with memory.

Authors:  Tibor Antal; P L Krapivsky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-24

4.  Exact steady-state velocity of ratchets driven by random sequential adsorption.

Authors:  Maria R D'Orsogna; Tom Chou; Tibor Antal
Journal:  J Phys A Math Gen       Date:  2007-05-25

5.  Effect of profilin on actin critical concentration: a theoretical analysis.

Authors:  Elena G Yarmola; Dmitri A Dranishnikov; Michael R Bubb
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

Review 6.  Functional and Biomimetic Materials for Engineering of the Three-Dimensional Cell Microenvironment.

Authors:  Guoyou Huang; Fei Li; Xin Zhao; Yufei Ma; Yuhui Li; Min Lin; Guorui Jin; Tian Jian Lu; Guy M Genin; Feng Xu
Journal:  Chem Rev       Date:  2017-10-09       Impact factor: 60.622

7.  Spatial control over near-critical-point operation ensures fidelity of ParABS-mediated DNA partition.

Authors:  Longhua Hu; Jérôme Rech; Jean-Yves Bouet; Jian Liu
Journal:  Biophys J       Date:  2021-08-19       Impact factor: 3.699

8.  Single-molecule tracking of collagenase on native type I collagen fibrils reveals degradation mechanism.

Authors:  Susanta K Sarkar; Barry Marmer; Gregory Goldberg; Keir C Neuman
Journal:  Curr Biol       Date:  2012-05-10       Impact factor: 10.834

9.  Diffusion of MMPs on the surface of collagen fibrils: the mobile cell surface-collagen substratum interface.

Authors:  Ivan E Collier; Wesley Legant; Barry Marmer; Olga Lubman; Saveez Saffarian; Tetsuro Wakatsuki; Elliot Elson; Gregory I Goldberg
Journal:  PLoS One       Date:  2011-09-01       Impact factor: 3.240

10.  Brownian Ratchet Mechanism for Faithful Segregation of Low-Copy-Number Plasmids.

Authors:  Longhua Hu; Anthony G Vecchiarelli; Kiyoshi Mizuuchi; Keir C Neuman; Jian Liu
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

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