Literature DB >> 26636200

Charge Model 4 and Intramolecular Charge Polarization.

Ryan M Olson1, Aleksandr V Marenich1, Christopher J Cramer1, Donald G Truhlar1.   

Abstract

Partial atomic charges provide the most widely used model for molecular charge polarization, and Charge Model 4 (CM4) is designed to provide partial atomic charges that correspond to an accurate charge distribution, even though they may be calculated with polarized double-ζ basis sets with any density functional. Here we extend CM4 to six additional basis sets, and we present a model (CM4M) that is individually optimized for the M06 suite of density functionals for ten basis sets. These charge models yield class IV partial atomic charges by mapping from those obtained with Löwdin or redistributed Löwdin population analyses of density functional electronic charge distributions. CM4M/M06-2X/6-31G(d)//M06-2X/6-31+G(d,p) partial atomic charges are calculated for ethylene, CHnCl4-n (n = 0-4), benzene, nitrobenzene, phenol, and fluoromethanol and used to discuss gas-phase polarization effects.

Entities:  

Year:  2007        PMID: 26636200     DOI: 10.1021/ct7001607

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  11 in total

1.  Analysis of SM8 and Zap TK calculations and their geometric sensitivity.

Authors:  Benjamin A Ellingson; A Geoffrey Skillman; Anthony Nicholls
Journal:  J Comput Aided Mol Des       Date:  2010-04-30       Impact factor: 3.686

2.  Prediction of SAMPL2 aqueous solvation free energies and tautomeric ratios using the SM8, SM8AD, and SMD solvation models.

Authors:  Raphael F Ribeiro; Aleksandr V Marenich; Christopher J Cramer; Donald G Truhlar
Journal:  J Comput Aided Mol Des       Date:  2010-04-01       Impact factor: 3.686

3.  Efficient calculation of SAMPL4 hydration free energies using OMEGA, SZYBKI, QUACPAC, and Zap TK.

Authors:  Benjamin A Ellingson; Matthew T Geballe; Stanislaw Wlodek; Christopher I Bayly; A Geoffrey Skillman; Anthony Nicholls
Journal:  J Comput Aided Mol Des       Date:  2014-03-16       Impact factor: 3.686

4.  Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations.

Authors:  Zheng Pei; Junjie Yang; Jingheng Deng; Yuezhi Mao; Qin Wu; Zhibo Yang; Bin Wang; Christine M Aikens; Wanzhen Liang; Yihan Shao
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

5.  Computation of Hydration Free Energies Using the Multiple Environment Single System Quantum Mechanical/Molecular Mechanical Method.

Authors:  Gerhard König; Ye Mei; Frank C Pickard; Andrew C Simmonett; Benjamin T Miller; John M Herbert; H Lee Woodcock; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2015-12-11       Impact factor: 6.006

6.  Predicting the relative binding affinity of mineralocorticoid receptor antagonists by density functional methods.

Authors:  Katarina Roos; Anders Hogner; Derek Ogg; Martin J Packer; Eva Hansson; Kenneth L Granberg; Emma Evertsson; Anneli Nordqvist
Journal:  J Comput Aided Mol Des       Date:  2015-11-16       Impact factor: 3.686

7.  Evaluation of CM5 Charges for Nonaqueous Condensed-Phase Modeling.

Authors:  Leela S Dodda; Jonah Z Vilseck; Kara J Cutrona; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2015-08-27       Impact factor: 6.006

8.  Consistent van der Waals radii for the whole main group.

Authors:  Manjeera Mantina; Adam C Chamberlin; Rosendo Valero; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2009-05-14       Impact factor: 2.781

9.  Evaluation of CM5 Charges for Condensed-Phase Modeling.

Authors:  Jonah Z Vilseck; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2014-04-01       Impact factor: 6.006

10.  Cysteine perthiosulfenic acid (Cys-SSOH): A novel intermediate in thiol-based redox signaling?

Authors:  David E Heppner; Milena Hristova; Tomoaki Ida; Ana Mijuskovic; Christopher M Dustin; Virág Bogdándi; Jon M Fukuto; Tobias P Dick; Péter Nagy; Jianing Li; Takaaki Akaike; Albert van der Vliet
Journal:  Redox Biol       Date:  2017-10-09       Impact factor: 11.799

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