Literature DB >> 26621230

Symmetry-Adapted Perturbation-Theory Interaction-Energy Decomposition for Hydrogen-Bonded and Stacking Structures.

Hubert Cybulski1, Joanna Sadlej1.   

Abstract

This letter reports the computational ab initio studies on the stacked and hydrogen-bonded geometries of the uracil dimer and pyrimidine···p-benzoquinone complex with a special regard to the ratios of different interaction-energy terms calculated by means of the symmetry-adapted perturbation theory (SAPT). In the hydrogen-bonded systems the absolute value of the dispersion term constitutes approximately half of the absolute value of the total SAPT0 interaction energy, while in the stacking complexes the ratio of the dispersion to the total interaction energy is much larger, ca. 1.2-2.0. Our SAPT results are compared with the DFT-SAPT results published recently by the Hobza group (J. Chem. Phys. 2007, 127, 075104), and the role of the dispersion contribution in stacking and hydrogen-bonded arrangements is discussed. The methodological part of this letter presents the influence of counterpoise corrections in the optimization procedure on the geometries of the systems and the calculated SAPT contributions.

Entities:  

Year:  2008        PMID: 26621230     DOI: 10.1021/ct800067m

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  How does modification of adenine by hydroxyl radical influence the stability and the nature of stacking interactions in adenine-cytosine complex?

Authors:  Zaneta Czyznikowska
Journal:  J Mol Model       Date:  2009-02-07       Impact factor: 1.810

3.  Competition and interplay between the lithium bonding and hydrogen bonding: R₃C···HY···LiY and R₃C···LiY···HY triads as a working model (R=H, CH₃; Y=CN, NC).

Authors:  Mohammad Solimannejad; Zahra Rezaei; Mehdi D Esrafili
Journal:  J Mol Model       Date:  2013-11       Impact factor: 1.810

4.  Effective adsorption of A-series chemical warfare agents on graphdiyne nanoflake: a DFT study.

Authors:  Hasnain Sajid; Sidra Khan; Khurshid Ayub; Tariq Mahmood
Journal:  J Mol Model       Date:  2021-04-01       Impact factor: 1.810

5.  Comparison of some dispersion-corrected and traditional functionals with CCSD(T) and MP2 ab initio methods: dispersion, induction, and basis set superposition error.

Authors:  Dipankar Roy; Mateusz Marianski; Neepa T Maitra; J J Dannenberg
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

6.  An accurate comparative theoretical study of the interaction of furan, pyrrole, and thiophene with various gaseous analytes.

Authors:  Hasnain Sajid; Tariq Mahmood; Khurshid Ayub
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

7.  Characteristics and nature of the intermolecular interactions in boron-bonded complexes with carbene as electron donor: an ab initio, SAPT and QTAIM study.

Authors:  Mehdi D Esrafili
Journal:  J Mol Model       Date:  2011-08-30       Impact factor: 1.810

8.  A reinvestigation of the dimer of para-benzoquinone and pyrimidine with MP2, CCSD(T), and DFT using functionals including those designed to describe dispersion.

Authors:  Mateusz Marianski; Antoni Oliva; J J Dannenberg
Journal:  J Phys Chem A       Date:  2012-07-19       Impact factor: 2.781

9.  Electrochemical sensing behavior of graphdiyne nanoflake towards uric acid: a quantum chemical approach.

Authors:  Misbah Asif; Hasnain Sajid; Khurshid Ayub; Mazhar Amjad Gilani; Mohammed Salim Akhter; Tariq Mahmood
Journal:  J Mol Model       Date:  2021-08-10       Impact factor: 1.810

10.  Substituent effects on cooperativity of pnicogen bonds.

Authors:  Mehdi D Esrafili; Mojhgan Ghanbari; Fariba Mohammadian-Sabet
Journal:  J Mol Model       Date:  2014-09-07       Impact factor: 1.810

  10 in total

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